Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1248 ATGTCCAACCCAATGGAGAACCTTCCTCAATTGATTTACAGAAACCCCCTTAGAAAAAGCTCAAGGAGGTCTTCAATGTATCTTGGGGTGAGAAGAAGACCATGGGGAAGATATGCTGCTGAGATAAGAAACCCTTACACCAAGGAGAGACACTGGCTGGGCACATTTGACACTGCTGAGGAAGCTGCCATAGCTTATGATCTCTCGTCCATCAATATTTCTGGCATTGAGAATGCTCGCACTAATTTTCATTACCCTTTCATGTCCCTTCCTCAGCCGCCATTGCCGCCGCCGCCGCAACCACCAACACCGGAGTTGGTGGAGGCAAGTGAGGATGATGCAGTTTGCCCTGAGATGATGAATGCTGTTGATGAGTGTTGTGATGAGTCTCTGGTTATTGCTTCCATCTTGCAAAGTTTCTGTCATTCTTCTGACAGTCTCTCCTAA 447 0.472 MSNPMENLPQLIYRNPLRKSSRRSSMYLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAIAYDLSSINISGIENARTNFHYPFMSLPQPPLPPPPQPPTPELVEASEDDAVCPEMMNAVDECCDESLVIASILQSFCHSSDSLS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1248 148 Pfam AP2 domain 28 68 IPR001471 GO:0003700|GO:0006355
Glsi01g1248 148 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Glsi01g1248 148 SUPERFAMILY DNA-binding domain 25 85 IPR016177 GO:0003677
Glsi01g1248 148 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Glsi01g1248 148 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Glsi01g1248 148 CDD AP2 25 83 IPR001471 GO:0003700|GO:0006355
Glsi01g1248 148 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 104 - -
Glsi01g1248 148 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
Glsi01g1248 148 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1248 Glsi-ChrGlsi01 64980305 64980751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1248 17 97 AP2-EREBP Transcription Factor Family AT1G12890 58.511 1.29e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi01g1248 AP2 2.1e-10 CL0081