Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1246 ATGGTCTGGGCTTCAGCTTTCATCTGGTGGGTCTTGTTAGTTCATCCATTGTGGCTGATTTCCGCTAACATGGAAGGTGATGCTTTACATAATCTGAGGACAAATTTACTGGACCCTAACAATGTTTTACAAAGTTGGGATCCTACACTTGTTAATCCATGCACATGGTTTCACGTAACATGCAACAATGATAATAGTGTAATAAGAGTTGATCTAGGAAATGCTGCTTTATCTGGTCAACTTGTTCCACAGCTTGGCCAGCTCAAGAATTTGCAGTACTTGGAACTCTACAGCAATAACATTACTGGCCCAATTCCAAGTGACTTGGGGAATCTTACTAGCTTGGTGAGCTTGGATCTGTACTTAAACAGTTTCACTGGTCCTATCCCATCTTCATTGGGCAAGTTGTCAAAGCTGCGATTCCTCCGGCTTAATAACAACAGCCTGTCAGGTCCTATTCCCATGTCATTGACCAATGTTTCATCTCTCCAAGTGCTGGATTTATCTAATAACCGTCTCTCTGGTGTGGTTCCTGATAATGGTTCCTTCTCATTGTTCACTCCTATCAGTTTTTCTAACAACTTGGATCTCTGTGGGCCAGTCACTGGGCACCCTTGTCCAGGCTCTCCTCCATTTTCTCCTCCCCCCCCTTTTGTTCCACCACCCCCAATTCCTACCCCAGGAGGTTATAGTCCCACTGGGGCAATAGCCGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCTGCTCCTGCAATTGCATTTGCATGGTGGCGTCGAAGGAAGCCACAAGAATTTTTCTTTGATGTTCCCGCTGAAGAGGATCCTGAAGTTCATCTTGGGCAGCTAAAGAGGTTCTCACTACGTGAACTGCAAGTTGCTACGGATAGTTTCAGCAATAAGAACATTCTGGGAAGGGGTGGATTTGGTAAAGTATACAAAGGACGCTTAGCAGATGGTTCATTGGTTGCTGTGAAAAGACTGAAAGAGGAGCGCACACCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATCAGTATGGCTGTGCATCGAAATCTTCTCCGCTTACGTGGGTTCTGTATGACACCAACTGAAAGGCTGCTTGTTTATCCCTATATGGCTAATGGAAGTGTCGCATCATGCTTAAGAGAGCGTCCAGCACATCAACTGCCCCTAGATTGGCCAACGAGGAAGCGAATTGCATTGGGATCTGCAAGGGGTCTTTCCTATTTGCACGATCATTGTGATCCCAAGATTATTCATCGTGATGTGAAAGCTGCAAACATATTGTTGGATGAGGAGTTTGAGGCTGTTGTTGGGGACTTTGGCTTGGCAAAACTAATGGACTACAAGGATACCCATGTCACAACTGCTGTGCGGGGCACAATTGGGCACATAGCTCCAGAGTACTTATCTACTGGGAAATCTTCTGAGAAAACTGATGTTTTTGGGTATGGTATCATGCTTCTGGAGCTGATCACCGGACAAAGAGCTTTTGACCTTGCTCGGCTTGCAAATGATGATGATGTTATGTTGCTTGATTGGGTAAAAGGACTTCTGAAAGAGAAAAAGCTAGAAATGTTGGTTGATCCTGATCTACAAAACAATTATGTTGAAGCAGAGGTAGAACAGCTAATCCAGGTTGCACTTCTCTGCACACAAGGTTCCCCCTTGGACCGGCCTAAGATGTCTGACGTCGTGAGAATGCTCGAAGGTGATGGCTTGGCAGAGAGATGGGATGAGTGGCAAAAGGTGGAAGTGTACCGCCAGGAAGTGGAGTTGGCCCCTCATCCCAGTTCCGATTGGCTCGTTGACTCCACTGAAAATCTACACGCAGTTGAGTTATCTGGTCCAAGGTGA 1866 0.4609 MVWASAFIWWVLLVHPLWLISANMEGDALHNLRTNLLDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNITGPIPSDLGNLTSLVSLDLYLNSFTGPIPSSLGKLSKLRFLRLNNNSLSGPIPMSLTNVSSLQVLDLSNNRLSGVVPDNGSFSLFTPISFSNNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPIPTPGGYSPTGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPAHQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVEAEVEQLIQVALLCTQGSPLDRPKMSDVVRMLEGDGLAERWDEWQKVEVYRQEVELAPHPSSDWLVDSTENLHAVELSGPR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1246 621 SUPERFAMILY L domain-like 26 194 - -
Glsi01g1246 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Glsi01g1246 621 Gene3D Ribonuclease Inhibitor 21 208 IPR032675 -
Glsi01g1246 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 583 - -
Glsi01g1246 621 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
Glsi01g1246 621 SUPERFAMILY Protein kinase-like (PK-like) 277 573 IPR011009 -
Glsi01g1246 621 ProSiteProfiles Protein kinase domain profile. 298 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1246 621 FunFam Somatic embryogenesis receptor kinase 1 267 374 - -
Glsi01g1246 621 FunFam Somatic embryogenesis receptor kinase 1 21 208 - -
Glsi01g1246 621 Pfam Leucine Rich Repeat 162 179 IPR001611 GO:0005515
Glsi01g1246 621 FunFam Somatic embryogenesis receptor-like kinase 1 375 592 - -
Glsi01g1246 621 Gene3D Transferase(Phosphotransferase) domain 1 375 592 - -
Glsi01g1246 621 ProSiteProfiles Leucine-rich repeat profile. 162 183 IPR001611 GO:0005515
Glsi01g1246 621 Pfam Protein kinase domain 299 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1246 621 SMART serkin_6 298 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1246 621 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Glsi01g1246 621 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1246 Glsi-ChrGlsi01 64910395 64919276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1246 5 621 Receptor kinase-like Gene Family AT1G71830 88.283 0.0 1044
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Glsi01g1246 Pkinase 1e-43 CL0016