Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1218 ATGGATCCAAAAGAGAACCTTTGTGCTAACACCTGGGCAAGGTCCTCTTCCTTAAACTCTTCTGGGAATGGATTACGTGTTAATCTGTCCTCAGACCCTCCCTCTTTTCCGGATCTCAGTTTGCAGCATAATCAACCAAAATGGGTTGTTCCCTCTATTTCAGATTATGGTATCAGGACTGAAGCACCTTTCAAAGAATTCAACCAACCCTCTCAAACCCAGTCCTTGCTTCAGACTGACTCCAACAATGAGATGGAGATCCCTGATCAAGAAAATTGTCAGATGGGTGATGCATCACAAACCAGTAAGCTCCAAAATTGGGATCCCAGCGCGATGTTGAATAATCTTTCTTTCTTGGAAGAAAAGATTCATCAGCTCCAGCATCTAGTCCATTTGATTGTTGGTCGAAAAGGCCAAGTTTTTGGACAACCAGGTGAACTTGCAGCCCAGGAACAACAGCTCATCACAGCTGATCTTACATCAATTATCGTTCAGTTGATCTCTACTGCAGGTAGTCTTCTCCCTTCTGTTAGGAATACCCTTACAAATACTAGCCTATCTCTTGGACAGCTTGGCCAGCTCCGGGGGATTACCATTCCTTCTGGATCTGGCCCAGGCAGTAGTAGTACTCAGCCCCAAAATAAGAGTGGAAATAAAATGTCTGATCAGCCCACTCGGATTGATCTACCCAATAGTTGTGAAATGGAGCGAAACTACAATTTGGAAGAGCATGAATCAAAAGATGAAGAAGATATGGAAGAGGGAGAGAACCTTCCACCTGGGTCCTATGAGATTTTACAGTTAGAAAAAGAAGAAATCCTTGCACCTCATACACATTTCTGTACAATTTGTGGGAAGGGATTTAAGAGAGATGCAAATCTTCGGATGCACATGCGAGGTCATGGTGATGAGTACAAAACCCCAGCAGCACTCGCAAAACCTAATAAAGAATCTGGGTCTGAACCAAAGCTTATCAAGAGGTATTCCTGCCCCTATGCTGGCTGCAAGCGTAACAAGGATCACAAGAAGTTTCAACCTCTGAAGACTATTTTATGTGTCAAAAACCACTACAAAAGAACACACTGTGACAAGAGTTACATTTGCAGCAGATGCAACACCAAGAAATTCTCAGTCATGGCAGATCTTAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTCTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTGTTCCAAGGCCACACTCCGGCCATTCCCTTAGATGATGTGAAAGTACCAGCTGGGCCGCCTGATCCGGAAAGCAAAGAAAACAGTAGTAAGGTGGAAGGTATAAACTTAAGTTTTGGATTAGATCCTTCTAATGGAAATGGAGTTCAAAGCATCATTAATGGGAAAGGTAATGTTGATGATCCTATCAATTATTTCTCATCATTGAATTTCGATACCTGTAACTTTGGTGGGTTTAATGATTTCCCTCGACCGCCATTTGAAGACTCAGAAGGTTCCTTCTCCTTTCTCATGCCCGGATCTTTTGGTTACGCTCAAAAGACTGGAGGAGAATCAACATCTGACAATCTGTAA 1593 0.4269 MDPKENLCANTWARSSSLNSSGNGLRVNLSSDPPSFPDLSLQHNQPKWVVPSISDYGIRTEAPFKEFNQPSQTQSLLQTDSNNEMEIPDQENCQMGDASQTSKLQNWDPSAMLNNLSFLEEKIHQLQHLVHLIVGRKGQVFGQPGELAAQEQQLITADLTSIIVQLISTAGSLLPSVRNTLTNTSLSLGQLGQLRGITIPSGSGPGSSSTQPQNKSGNKMSDQPTRIDLPNSCEMERNYNLEEHESKDEEDMEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPNKESGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDVKVPAGPPDPESKENSSKVEGINLSFGLDPSNGNGVQSIINGKGNVDDPINYFSSLNFDTCNFGGFNDFPRPPFEDSEGSFSFLMPGSFGYAQKTGGESTSDNL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1218 530 SUPERFAMILY beta-beta-alpha zinc fingers 277 304 IPR036236 -
Glsi01g1218 530 MobiDBLite consensus disorder prediction 196 228 - -
Glsi01g1218 530 MobiDBLite consensus disorder prediction 196 233 - -
Glsi01g1218 530 ProSitePatterns Zinc finger C2H2 type domain signature. 281 301 IPR013087 -
Glsi01g1218 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 279 306 IPR013087 -
Glsi01g1218 530 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 87 501 IPR044300 GO:0010044|GO:0010447
Glsi01g1218 530 Gene3D Classic Zinc Finger 263 333 - -
Glsi01g1218 530 SMART c2h2final6 366 388 IPR013087 -
Glsi01g1218 530 SMART c2h2final6 279 301 IPR013087 -
Glsi01g1218 530 SMART c2h2final6 328 361 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1218 Glsi-ChrGlsi01 64042640 64044232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1218 247 528 C2H2 Transcription Factor Family AT1G34370 70.139 2.09e-143 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi01g1218 None None None