Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1213 ATGGTTTTGTCTCGGCTATCCCAGAACCAAACCAACACCACGATCACCCTCTCCCGGCTTCTTAATGAAACTGTTTCATGGAATATTGACCCAAATCCATGTAAATGGAAGGGAGTCACTTGCGACTCCAGCGATTCCTCTATAATCGAAATTGTATTGTCTGGGTCTTCCTTGTCTTCTTCCGACTTTTTGCCTGTTCTTTGTCAAATTGAAACTTTGCAGCGTCTTGATGTCTCAAATAACCAACTTACATCAATCCCGGATAAGTTCATGACTGATTGTGGGAACATTAAAGTGTTAAAGCAGCTCAATTTTAGCAAAAACATGTTAAGTGGTTTTTTACCTACTTTTCATGGTTTTGATGGGTTAGAGGTTCTGGATATGTCTTTGAATGGCTTCCAAGGGAGAATTGTTTCCCAGTTATCTGAATTGGTGAGTCTCAAGAACTTGAATCTTGGTAACAATAAATTCACTGGGTCTCTTCCTACCACCCTGGGAAATTCCATGGCTTTGGAGCGTCTTGTGCTATCTGTTAATTTATTTGAAGGGGCAATCCCTGATGAAATCTCGAGTTACAAAAACTTGGCTTCGATTGATCTTAAAGCAAATAAGCTTTTAGGGTCTATTCCTAGCAACATCGGAAATCTATCCAAATTGGAAACTTTGATTCTTTCCTCTAATTTCCTCAGCGGGGAAATCCCAAGAACACTCTCAAACATCACAACCCTCACCCGTTTCGCAGCCAATTCAAACAACTTTACGGGTTCTGTTCCCAGGGGAATTACAAGATTTCTCCAGCATTTGGATCTTAGTTATAATAAGTTGTCTGGGCCTATTCCAGTAGACCTTCTATCACAATCAAATTTGCAGCTTGTGGATTTGTCCAATAATTCGTTATCTGGGTCATTACCTACAAATATATCTTCTGGAATACTCAGATTGAGATTAGGGAATAATTTGCTAAGTGGGATGGTACCTTCAGCAACTCTTAAAACACTTCAGAATTTGATGTACATGGAACTCGAAGGAAATAACTTGACAGGCTCAATACCAGCTGAAGTGGGTTCTTGCCGGAGTTTGGCTTTGTTGAATTTGGCTCAGAATCATCTAACTGGGGTGCTGCCTGCAGAGTTGGGTAGCCTTAGCAATCTTCAAGTATTGAAGCTGGAAATGAATAATTTTTCTGGTCAAATCCCAACTGAAATCGCCCACCTACAGAGGTTGTCAACACTTAATTTGAGCTGGAATTCTCTAAATGGACACATTCCGTCAGCTATATCCAGCCTGAGCAACCTTACTAATTTGTACTTACAACAGAACAATCTCGCTGGCTCTATTCCCATTTCCATCAGCAGCATGACATCCCTTATTGAACTCCAACTTGGGGAAAACCAGCTAAGTGGTGAGATTCCGAAAATGCCATCGAGTCTACAGATTGCATTGAATCTCAGTAACAACCTATTTACAGGACTTATTCCTAGCAATCTTGGTGATTTGAGTAATCTGGAAATTTTGGATCTCTCAAATAACAACTTTTCTGGCAAAATTCCCGACTCTTTGACTAAAATTGGGGCTTTGACACAGTTGTTACTTTCTAACAATCATTTGTCTGGTTTCATTCCTAAATTTAATCCCTATGTTGTAGTTAATTACAGCGGAAATGATGATCTCATAAACAATACCAATTCCAACACTTCCCTAAGATCAGCAAAGAAGGGAAATTCTGTTGTTGTGGCAATTCTTGTTGCAATTGCAGCAGCTATTTTCCTTGTTGGCTTGGTCACTCTGCTGGTTGTATTAATCTCTCGGCGCTTATACAGGGTTAATGATGAACACGTACAGCCACCTGCAGATATTCTCCTTCCTCAAGTCATCCAAGGTAACTTGTTAACTCCTAATGGAATTCACAGATCAAACATTGACTTCTCCAAGGCCATGGAAGCTGTTGCTGAAACATCAAACATCACTCTGAAAACTCGGTTTTCAGTTTATTATAAGGCCATTATGCCATCTGGATCAATCTATTTTGTCAAGAAGCTTAACTGGAGCGACAAGATATTCCCACTTGGCAGTCATGATAAGTTTGGGAAAGAGCTAGAGGTTTTGGCAAAATTGAACAATTCAAATGTCATGACTCCTTTAGCTTATGTTCTGTCCACTGACAGTGCTTATATATTGTATGAATTTGTCTCAAATGGCTCTCTTTTTGATGTTCTTCATGGAAGCATGGGAAGCTCCTTAGACTGGGCTAGCAGATACAGTATAGCAGTTGGGGTCGCTCAAGGTCTGTCTTTTCTTCATGGATTTGCCTCTGGTCCAATACTTCTCCTGGATCTATCAAGTAAAAGTATAATGCTGAAGTCCCTCAAGGAGCCTCTAGTTGGGGACATTGAACTCTATAAGGTGATTGATCCCTCAAAGAGTACAGGAAGTTTTTCTGCTGTTGCTGGTTCTGTTGGCTATATTCCTCCAGAGTATGCATACACAATGAGAGTAACAATGGCTGGGAATGTATACAGCTTTGGGGTAATCCTGCTTGAATTGCTGACAGGAAAAGCTGCGGTGACTGAGGGAACCGAATTGGTCAAGTGGGTATTGCGTAACTCAGCAAAGCAAGATCACATTCTTGACTTCAATGCCAGTAGAACATCACAGGCTGTCAGAAACCAGATGCTTGCTATCCTTCGGATTGCTCTTGTCTGTGTTAGTACTTCCCCTGAAGCAAGACCAAAGATGAAGAGTGTGCTACGGATGCTCCTGAATGCGAGATGA 2772 0.4091 MVLSRLSQNQTNTTITLSRLLNETVSWNIDPNPCKWKGVTCDSSDSSIIEIVLSGSSLSSSDFLPVLCQIETLQRLDVSNNQLTSIPDKFMTDCGNIKVLKQLNFSKNMLSGFLPTFHGFDGLEVLDMSLNGFQGRIVSQLSELVSLKNLNLGNNKFTGSLPTTLGNSMALERLVLSVNLFEGAIPDEISSYKNLASIDLKANKLLGSIPSNIGNLSKLETLILSSNFLSGEIPRTLSNITTLTRFAANSNNFTGSVPRGITRFLQHLDLSYNKLSGPIPVDLLSQSNLQLVDLSNNSLSGSLPTNISSGILRLRLGNNLLSGMVPSATLKTLQNLMYMELEGNNLTGSIPAEVGSCRSLALLNLAQNHLTGVLPAELGSLSNLQVLKLEMNNFSGQIPTEIAHLQRLSTLNLSWNSLNGHIPSAISSLSNLTNLYLQQNNLAGSIPISISSMTSLIELQLGENQLSGEIPKMPSSLQIALNLSNNLFTGLIPSNLGDLSNLEILDLSNNNFSGKIPDSLTKIGALTQLLLSNNHLSGFIPKFNPYVVVNYSGNDDLINNTNSNTSLRSAKKGNSVVVAILVAIAAAIFLVGLVTLLVVLISRRLYRVNDEHVQPPADILLPQVIQGNLLTPNGIHRSNIDFSKAMEAVAETSNITLKTRFSVYYKAIMPSGSIYFVKKLNWSDKIFPLGSHDKFGKELEVLAKLNNSNVMTPLAYVLSTDSAYILYEFVSNGSLFDVLHGSMGSSLDWASRYSIAVGVAQGLSFLHGFASGPILLLDLSSKSIMLKSLKEPLVGDIELYKVIDPSKSTGSFSAVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKAAVTEGTELVKWVLRNSAKQDHILDFNASRTSQAVRNQMLAILRIALVCVSTSPEARPKMKSVLRMLLNAR 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1213 923 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 8 163 - -
Glsi01g1213 923 ProSiteProfiles Leucine-rich repeat profile. 72 93 IPR001611 GO:0005515
Glsi01g1213 923 Gene3D Phosphorylase Kinase; domain 1 636 729 - -
Glsi01g1213 923 Pfam Leucine rich repeat 72 131 IPR001611 GO:0005515
Glsi01g1213 923 Pfam Leucine rich repeat 481 536 IPR001611 GO:0005515
Glsi01g1213 923 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 305 569 - -
Glsi01g1213 923 SMART LRR_typ_2 429 453 IPR003591 -
Glsi01g1213 923 SMART LRR_typ_2 381 404 IPR003591 -
Glsi01g1213 923 SMART LRR_typ_2 70 93 IPR003591 -
Glsi01g1213 923 SMART LRR_typ_2 216 240 IPR003591 -
Glsi01g1213 923 SMART LRR_typ_2 287 310 IPR003591 -
Glsi01g1213 923 SMART LRR_typ_2 499 523 IPR003591 -
Glsi01g1213 923 SMART LRR_typ_2 405 428 IPR003591 -
Glsi01g1213 923 SMART LRR_typ_2 333 357 IPR003591 -
Glsi01g1213 923 SMART LRR_typ_2 144 167 IPR003591 -
Glsi01g1213 923 PRINTS Leucine-rich repeat signature 499 512 - -
Glsi01g1213 923 PRINTS Leucine-rich repeat signature 265 278 - -
Glsi01g1213 923 SUPERFAMILY Protein kinase-like (PK-like) 661 919 IPR011009 -
Glsi01g1213 923 Pfam Leucine rich repeat N-terminal domain 25 42 IPR013210 -
Glsi01g1213 923 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 164 257 - -
Glsi01g1213 923 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 619 729 - -
Glsi01g1213 923 SUPERFAMILY RNI-like 233 542 - -
Glsi01g1213 923 SUPERFAMILY L domain-like 27 303 - -
Glsi01g1213 923 FunFam leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 730 923 - -
Glsi01g1213 923 Gene3D Ribonuclease Inhibitor 162 261 IPR032675 -
Glsi01g1213 923 Gene3D Ribonuclease Inhibitor 311 420 IPR032675 -
Glsi01g1213 923 Gene3D Ribonuclease Inhibitor 262 310 IPR032675 -
Glsi01g1213 923 Gene3D Ribonuclease Inhibitor 421 476 IPR032675 -
Glsi01g1213 923 Gene3D Ribonuclease Inhibitor 477 566 IPR032675 -
Glsi01g1213 923 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 23 919 - -
Glsi01g1213 923 Gene3D Ribonuclease Inhibitor 3 161 IPR032675 -
Glsi01g1213 923 Gene3D Transferase(Phosphotransferase) domain 1 730 923 - -
Glsi01g1213 923 ProSiteProfiles Protein kinase domain profile. 650 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1213 923 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Glsi01g1213 923 Pfam Leucine Rich Repeat 218 239 IPR001611 GO:0005515
Glsi01g1213 923 Pfam Protein tyrosine and serine/threonine kinase 692 919 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1213 Glsi-ChrGlsi01 64011935 64015069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1213 123 923 Receptor kinase-like Gene Family AT2G41820 39.641 5.02e-164 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi01g1213 PK_Tyr_Ser-Thr 3.5e-22 CL0016