Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1200 ATGAAAGTGCTAGCTAGTCTTGTCCCTAGCAATCAAACAATACCCTTGACCAGAATAGCAAGCATGGGTTTCAGAGAGACCAACAAACACCACCAGGTGAAAGCCCCCACTAAGGAAGAGGATGACCAAGCTTGCCTCTATGCCATGCTATTGTCTAGCTTCCAAATTTTCCCTGCGATTCTGAATGCTGCAATTGAGCTCAAGGTGTTTGAGAAAATGTCCGAATCAGCCCCACCTGGTGTTTTCTTGTCAATCTCTGAGATTGCTTCTCACCTTCCCACACAGCATCCTGAGTTGCACAACAGGCTAGACCGAATGCTTCGCGTGCTTGCCAGTTTCAACGTTCTGAATTGTACTACGCGTACTAACCAAGATGGCACGGTTGAAAGGCTCTATAGGCTCTCACTGGCTGGAAATTACTTTGTCCAGAATGAAACTGAGAGCCTGGCTTCCTTCTCAAACCTCACCTGTCATCCTGCTCCTGTTCAGGTTTGGCTAAACATCAAGGAAGCAATTCTTGATGGAGGAATAGACCTATTCAACAAAGTTCATGGAATATCCATGTGGAAATACATGGAGAAGGATACAAAACTGAACCACACTTTCAACAAGGCAATGGCAGGAATCTCAGCAATTCAAATGAGGAAGTATTTGGAAGTGTATGATGGATTTGGAGGAGTGTCAACCTTGGTTGATGTGGGGGGAGGTACTGGTCAAAGTCTCAAAATGATCCTCTCCGAGCACCCTAATATAAAGGGTATTAACTTTGATTTGCCCCAGGTTATCCAGCATGCCCCACCCTATCCAGGTATTGTGCATATTGGAGGAGACATGTATGAAAGTGTTCCAAAGGGTGATGCCATAATGATAAAGGCTACTTGTCACAATTGGTCAGACGAAAAATGTGTAGCACTTTTGAAAAACTGTTATAAAGCACTCCCTCAAAATGGGAAGGTGATTATTTTGGACATGATCATGCCTGAAGAACCAGAGACAAGTGATGCTGCAAAGTATGTCTCCATCATTGACAACACAATGTTCATACAAGCTGGAGGGAAAGAAAGAACTGAGAAGGAATTTGAGAAGCTATGCAAAGACTCTGGATTCTCAAGTGCTAAAGTTGTTTCTCGTGCTCTTTCAGTTTATGGAGTCATAGAGCTTTATAAATAA 1170 0.4333 MKVLASLVPSNQTIPLTRIASMGFRETNKHHQVKAPTKEEDDQACLYAMLLSSFQIFPAILNAAIELKVFEKMSESAPPGVFLSISEIASHLPTQHPELHNRLDRMLRVLASFNVLNCTTRTNQDGTVERLYRLSLAGNYFVQNETESLASFSNLTCHPAPVQVWLNIKEAILDGGIDLFNKVHGISMWKYMEKDTKLNHTFNKAMAGISAIQMRKYLEVYDGFGGVSTLVDVGGGTGQSLKMILSEHPNIKGINFDLPQVIQHAPPYPGIVHIGGDMYESVPKGDAIMIKATCHNWSDEKCVALLKNCYKALPQNGKVIILDMIMPEEPETSDAAKYVSIIDNTMFIQAGGKERTEKEFEKLCKDSGFSSAKVVSRALSVYGVIELYK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1200 389 PANTHER O-METHYLTRANSFERASE 48 369 IPR016461 GO:0008168
Glsi01g1200 389 FunFam Caffeic acid 3-O-methyltransferase 26 141 - -
Glsi01g1200 389 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 49 389 IPR016461 GO:0008168
Glsi01g1200 389 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 148 386 IPR029063 -
Glsi01g1200 389 Pfam Dimerisation domain 60 111 IPR012967 GO:0046983
Glsi01g1200 389 SUPERFAMILY "Winged helix" DNA-binding domain 39 145 IPR036390 -
Glsi01g1200 389 PIRSF O-mtase 25 389 IPR016461 GO:0008168
Glsi01g1200 389 Gene3D - 25 141 IPR036388 -
Glsi01g1200 389 Pfam O-methyltransferase domain 165 370 IPR001077 GO:0008171
Glsi01g1200 389 Gene3D Vaccinia Virus protein VP39 142 389 IPR029063 -
Glsi01g1200 389 FunFam Caffeic acid O-methyltransferase 143 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1200 Glsi-ChrGlsi01 63847913 63850851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1200 36 389 Monolignol Biosynthesis Gene Families AT5G54160 49.157 9.33e-116 340