Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1199 ATGAGCTCCATCACCACAGAGAGTGATCAATATGATGCTTGTCTTGATGCCATGTTGCTATCTAGTGGCCAAGTCTACCCTGCAGTGTTGAATGCTGCCATTGAGCTCAACCTGTTTGAGATCATTGCTAAGGGAAGCCCTAAGGGAATGTCAGCCTCTAATATTACTTCTAAGATTTCGAGTCAACGTGCCAACACAGTTCGCAGGCAAAACTTCAAGCAAGTGATTCTTGATGATGAAGAGGACCTATTCAAGAAAGTTCATGGGATATCTTTGTTTGAGTATATGGAAACAGACCGAACATTCAAACCCTTGTTCCATAGGGCAATGGCTGATATCTCAACCATGCACATGAGGCAAATTCTTGAAACATATGAAGGTTTTGAAGGGATATCAACACTTAGCAGGTGGCATTGGGCAAAGCCTCAAAATGATCATCTCTAA 444 0.4234 MSSITTESDQYDACLDAMLLSSGQVYPAVLNAAIELNLFEIIAKGSPKGMSASNITSKISSQRANTVRRQNFKQVILDDEEDLFKKVHGISLFEYMETDRTFKPLFHRAMADISTMHMRQILETYEGFEGISTLSRWHWAKPQNDHL 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1199 147 Pfam O-methyltransferase domain 73 134 IPR001077 GO:0008171
Glsi01g1199 147 Gene3D - 81 110 - -
Glsi01g1199 147 Pfam Dimerisation domain 29 69 IPR012967 GO:0046983
Glsi01g1199 147 Gene3D Vaccinia Virus protein VP39 111 133 IPR029063 -
Glsi01g1199 147 SUPERFAMILY "Winged helix" DNA-binding domain 9 66 IPR036390 -
Glsi01g1199 147 Gene3D - 1 71 IPR036388 -
Glsi01g1199 147 PANTHER O-METHYLTRANSFERASE 77 134 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1199 Glsi-ChrGlsi01 63811323 63812324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1199 71 134 Monolignol Biosynthesis Gene Families AT1G77530 50.000 8.02e-15 67.8