Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1198 ATGAGCCCCATCGCCACAGAGAGTGATCAATATGATGTTTGTCTTGATGCCATGTTGCTATCTAGTGGCCAGGTCTACCCTGCAGTGTTGAATGCTGCCATTGAGCTCAACCTGTTTGAGATCATTGCTAAGGGAAGCCCTAAGGGCATGTCAGCCTCTGATATTGCTTCTAAGCTTCCGAGTCAACATGCCAACACAGTTCGCAGGCTCGATCGAGTGTTGTTCTTGCTTGCTAGTTACTCTCTGCTAACTTGTTCTAATAAAATCCATCAAGATGATAGGGTTGAGAGGTTTTATGGGCTATCTCCCACTGGTAAATACATGTTCAATGATGATGATGGAGCCTCCTATGCTTCAGTTTCAAAATTGCTTTGTCACCCAGCTTATATAAAAGTTCTACAAAACTTCAAGCAAGTGATTATTGATGATGAAGAGGACCTATTCAAGAGAGTTCATGGAATGTCTTTGTTTGAATATATGGAAACTGATCCAACATTCAAACCCTTGTTCCATAGGGCAATGGCTGATATCTCAACCATGCACATGAGGCAGATTCTTGAAACATACAAAGGTTTTGAAGGGATATCAACACTTGTTGACGTGGCAGGTGGCATTGGACAAAGCCTCAAAATGATCATCTCTAAGTACCCTTCAATAAAGGGTATTAACTTTGATTTACCTCAAGTGGTACAACATGCCCTACCTCACCCAGGTGTCCCAGAAGGTGATGCTATAATGATGAAGGCTATAACCCATAATTGGAGCAATGAAAAATGCATACAAATTTTGAAGAATTGCCATCAATCCCTTAAGAAAGATGGGAAGGTCATTCTCATTGACGTGATAATGCCGAAGGCAACCAACTGCGATAAGTATGTTTCTATTCATGACAATACGATGTTTGTTCAAGCTGGTGGGAAGGAAAGAACCGAGAAAGAATTTGAAGCTCTATGCAAAGGTGCTGGGTTTTCTAGGTATCAAGTTGCTTCTTGTGTTTTCTCAGCTTTGGGGGTCATTGAGTTTTTTAAATAA 1032 0.4109 MSPIATESDQYDVCLDAMLLSSGQVYPAVLNAAIELNLFEIIAKGSPKGMSASDIASKLPSQHANTVRRLDRVLFLLASYSLLTCSNKIHQDDRVERFYGLSPTGKYMFNDDDGASYASVSKLLCHPAYIKVLQNFKQVIIDDEEDLFKRVHGMSLFEYMETDPTFKPLFHRAMADISTMHMRQILETYKGFEGISTLVDVAGGIGQSLKMIISKYPSIKGINFDLPQVVQHALPHPGVPEGDAIMMKAITHNWSNEKCIQILKNCHQSLKKDGKVILIDVIMPKATNCDKYVSIHDNTMFVQAGGKERTEKEFEALCKGAGFSRYQVASCVFSALGVIEFFK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1198 343 Gene3D Vaccinia Virus protein VP39 109 343 IPR029063 -
Glsi01g1198 343 Pfam Dimerisation domain 29 78 IPR012967 GO:0046983
Glsi01g1198 343 Pfam O-methyltransferase domain 137 324 IPR001077 GO:0008171
Glsi01g1198 343 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 18 343 IPR016461 GO:0008168
Glsi01g1198 343 SUPERFAMILY "Winged helix" DNA-binding domain 10 113 IPR036390 -
Glsi01g1198 343 PIRSF O-mtase 2 343 IPR016461 GO:0008168
Glsi01g1198 343 FunFam Caffeic acid 3-O-methyltransferase 2 108 - -
Glsi01g1198 343 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 339 IPR029063 -
Glsi01g1198 343 Gene3D - 2 108 IPR036388 -
Glsi01g1198 343 PANTHER O-METHYLTRANSFERASE 17 325 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1198 Glsi-ChrGlsi01 63770649 63772556 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1198 1 343 Monolignol Biosynthesis Gene Families AT5G54160 46.797 2.19e-102 304