Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1188 ATGACTGCAACCCAGTTTTCTGTTAAGAGTCCTTCAGGTCATTATCCACCACCAGAAGAAGAGGCTTGGGAGAGTAGTGCACTGCACTCAAAGAAATCTGACATGCTTGTGCCAGCAAAGTCAAGCTTTTCGGCCAACTTTTGTGTTCAATATACTTTTTCCCAAGAAAGATCATCAATGGAGATGGAATCTTGTGTTCCACCAGGGTTCAGATTTCATCCGACAGAGGAAGAACTTGTAGGGTACTACCTCAAGAGGAAGATAAACGCACTAAAAATCGATCTAGATGTTATTGTTGAGATCGATCTCTACAAAATTGAACCATGGGACATTCAAGATAGATGCAAGCTAGGATATGAGGAACAGAGTGAGTGGTATTTTTTCAGTCACAAAGATAAGAAATACCCGACTGGAACAAGAACTAACAGAGCCACTGCTGCTGGGTTCTGGAAAGCCACTGGAAGGGACAAGGCTGTGATGTCCAAGAACAGAATCATAGGGATGAGGAAGACCCTTGTGTTCTACAAGGGACGCGCCCCAAATGGCAGAAAAACAGACTGGATTATGCATGAATATCGGATCCAAACCTCTGAACATAGCCCTCCTCAGGCAAGATGGGTGGTATGCCGAGCATTTAGAAAGCCAAGTCCCAGTCATCAAAGGCAAGGATTTGAAGCTTGGAGTAATAGTCATCATCAAGCACACTATTTCAGAGACCAAATAAGCTATGCAAGGCCTCTATCATTTACAGATATTTTGAACAATAACGAAACCCCTGCAGTGCTTTATCCGAATACTGAAGGTACAAGTTTTAGCCACCCCTTCAGCTTGGATCAGCAGCAGCAGTTTGTGTCAAACGACACCGTTTTGGACAACCAGAACCACCTTATTGAGCTTCCTCAGCTAGATAGCCCCACAGCTTCTCTATCAGCAACTTTGGCAATCAAAGAACATAATAACAACGGCTTATTACCAAATGAAGATAATTACAGTGAAGAAAGGAGCAATCACAGTGGCCAATGCATCGATTGGAAAAGCTTGGACAACTTATTTGCTTCACAGTTCACAGATACTGCTTATTTTTCACATCCAAACTTGCCCATGATACCCCATAGCCATGACCTACAGCCTCAAAATTAA 1140 0.4298 MTATQFSVKSPSGHYPPPEEEAWESSALHSKKSDMLVPAKSSFSANFCVQYTFSQERSSMEMESCVPPGFRFHPTEEELVGYYLKRKINALKIDLDVIVEIDLYKIEPWDIQDRCKLGYEEQSEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRIQTSEHSPPQARWVVCRAFRKPSPSHQRQGFEAWSNSHHQAHYFRDQISYARPLSFTDILNNNETPAVLYPNTEGTSFSHPFSLDQQQQFVSNDTVLDNQNHLIELPQLDSPTASLSATLAIKEHNNNGLLPNEDNYSEERSNHSGQCIDWKSLDNLFASQFTDTAYFSHPNLPMIPHSHDLQPQN 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1188 379 MobiDBLite consensus disorder prediction 1 21 - -
Glsi01g1188 379 SUPERFAMILY NAC domain 59 214 IPR036093 GO:0003677|GO:0006355
Glsi01g1188 379 FunFam Nac domain-containing protein 86 75 217 - -
Glsi01g1188 379 Gene3D NAC domain 75 217 IPR036093 GO:0003677|GO:0006355
Glsi01g1188 379 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 63 310 - -
Glsi01g1188 379 Pfam No apical meristem (NAM) protein 67 194 IPR003441 GO:0003677|GO:0006355
Glsi01g1188 379 ProSiteProfiles NAC domain profile. 66 214 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1188 Glsi-ChrGlsi01 63309767 63314609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1188 62 369 NAC Transcription Factor Family AT1G71930 54.430 2.03e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi01g1188 NAM 8.4e-37 No_clan