Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1184 ATGGAGAAACGTAGCTCAGCATCAAAATCTTCTTCAACAAAATCCGCATCGATCTTGCCTTATGAAACGCCAAAACTCAGAGACCACTACATTGTGGGCAAGAAGCTTGGCCAAGGCCAATTTGGCACTACATACCTTTGCACCCACAAAACAACAGGGAAGCTCTATGCCTGCAAATCGATCCCGAAGCGAAAGCTTATGTGCAAAGAAGATTACGACGATGTGTGGAGAGAGATTCAGATCATGCATCATTTATCGGAGCACCCAAATGTGGTTCTAATTCAAGGGACGTACGAAGACTCGGTTTTTGTGCACCTGGTTATGGAGCTCTGTGCTGGGGGTGAGCTGTTTGATAGGATCATTCAGAAGGGGCATTACAGTGAGAGAGAGGCCGTCAAATTGATAAAGACCATTGTGGGTGTGGTGGAAGCTTGTCACTCTCTTGGAGTTATGCATAGGGATCTCAAGCCTGAGAATTTTTTGTTTGATAGTCCTGGAGAAGATGCCAAGATGAAGGCTACGGATTTTGGGCTCTCTGTGTTTTACAAGCCAGGACAAGCCTTTTGCGATGTAGTTGGAAGCCCCTACTATGTTGCCCCTGAGATATTGTGCAAGCATTATGGACCAGAAGTAGACGTATGGAGTGCTGGAGTTATCCTCTACATCTTGCTGAGTGGGGTCCCACCTTTTTGGGCTGAAACTGAACCAGGAATTTTCAGACAGATTTTACAAGGAAAGCTAGATTTTCAATCTGATCCATGGCCTAAGATCTCAGAAAGTGCTAAAGATTTGGTACAGAAAATGCTTGAGAGGGACCCTAAGAAAAGAATTTCTGCTCATGAAGTCTTATGTCACCCTTGGATAGTTGATGATACAGTTGCCCCAGACAAACCTCTGGATTCCGCAGTTTTGTCGCGCCTGAAGCATTTTTCAGCTATGAATAAAGTCAAGAAGATGGCACTGCGTGTCATAGCAGAAAGACTTTCAGAGGAAGAAATTGGTGGTTTAAAAGAGTTGTTCAAAATGCTTGACACAGACAACAGTGGGACAATAACATTTGAGGAACTCAAAGAAGGTCTGAAAAAAGTGGGTTCTGATCTAATGGAATCTGAAATTAAATCCCTTATGGAAGCGGCTGATATAGACAACAGTGGAACAATAGACTACGGTGAATTTATTGCTGCTACACTGCACATGAATAAGATGGAAAGAGAGGAAAATTTAGTTGCAGCTTTTGCCTATTTTGACAAAGATGGTAGTGGTTACATCACCATTGATGAGCTTCAAACAGCTTGTACAGAGTTTGGCTTAGGCGAAGTAAATCTAGAAGATATGACAGAGATTGATCAAGACCATGATGGGAGAATTGATTATGGGGAGTTTGTAGCCATGATGAAACAGGGTGATGGAGATATTGGTAGGAGCAGAACCATGAAAGGCAATTTGAACTTCAATTTAGCGGATGCCTTCCAAGTAAAAGACTCATTCTGA 1491 0.4279 MEKRSSASKSSSTKSASILPYETPKLRDHYIVGKKLGQGQFGTTYLCTHKTTGKLYACKSIPKRKLMCKEDYDDVWREIQIMHHLSEHPNVVLIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEREAVKLIKTIVGVVEACHSLGVMHRDLKPENFLFDSPGEDAKMKATDFGLSVFYKPGQAFCDVVGSPYYVAPEILCKHYGPEVDVWSAGVILYILLSGVPPFWAETEPGIFRQILQGKLDFQSDPWPKISESAKDLVQKMLERDPKKRISAHEVLCHPWIVDDTVAPDKPLDSAVLSRLKHFSAMNKVKKMALRVIAERLSEEEIGGLKELFKMLDTDNSGTITFEELKEGLKKVGSDLMESEIKSLMEAADIDNSGTIDYGEFIAATLHMNKMEREENLVAAFAYFDKDGSGYITIDELQTACTEFGLGEVNLEDMTEIDQDHDGRIDYGEFVAMMKQGDGDIGRSRTMKGNLNFNLADAFQVKDSF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1184 496 Gene3D Phosphorylase Kinase; domain 1 31 115 - -
Glsi01g1184 496 SMART serkin_6 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1184 496 FunFam Calcium-dependent protein kinase SK5 116 300 - -
Glsi01g1184 496 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Glsi01g1184 496 CDD STKc_CAMK 29 287 - -
Glsi01g1184 496 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 461 - -
Glsi01g1184 496 Gene3D Transferase(Phosphotransferase) domain 1 116 298 - -
Glsi01g1184 496 Pfam EF-hand domain pair 406 466 IPR002048 GO:0005509
Glsi01g1184 496 Pfam EF-hand domain pair 336 396 IPR002048 GO:0005509
Glsi01g1184 496 CDD EFh 336 395 IPR002048 GO:0005509
Glsi01g1184 496 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Glsi01g1184 496 Gene3D - 299 469 - -
Glsi01g1184 496 SUPERFAMILY EF-hand 317 468 IPR011992 -
Glsi01g1184 496 ProSiteProfiles EF-hand calcium-binding domain profile. 331 366 IPR002048 GO:0005509
Glsi01g1184 496 FunFam Calcium-dependent protein kinase 1 32 115 - -
Glsi01g1184 496 FunFam Calcium-dependent protein kinase 1 296 469 - -
Glsi01g1184 496 ProSiteProfiles EF-hand calcium-binding domain profile. 367 402 IPR002048 GO:0005509
Glsi01g1184 496 ProSitePatterns EF-hand calcium-binding domain. 380 392 IPR018247 -
Glsi01g1184 496 SMART efh_1 335 363 IPR002048 GO:0005509
Glsi01g1184 496 SMART efh_1 440 468 IPR002048 GO:0005509
Glsi01g1184 496 SMART efh_1 371 399 IPR002048 GO:0005509
Glsi01g1184 496 SMART efh_1 407 435 IPR002048 GO:0005509
Glsi01g1184 496 Pfam Protein kinase domain 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1184 496 ProSiteProfiles Protein kinase domain profile. 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1184 496 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Glsi01g1184 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Glsi01g1184 496 SUPERFAMILY Protein kinase-like (PK-like) 26 299 IPR011009 -
Glsi01g1184 496 ProSiteProfiles EF-hand calcium-binding domain profile. 447 471 IPR002048 GO:0005509
Glsi01g1184 496 ProSitePatterns EF-hand calcium-binding domain. 344 356 IPR018247 -
Glsi01g1184 496 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1184 Glsi-ChrGlsi01 63255117 63261208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1184 1 492 EF-hand Containing Proteins AT1G35670 81.947 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi01g1184 Pkinase 5.6e-76 CL0016