Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1172 ATGGGCAGCACGAATCTGCTCGCCTTTTTCTTCGCTCTGTTGTCTGCATGTTATATGGGGGCAGCCAAGGTGGTGTTGACTGAGGGCAATGCCACTCTTTCCTTCGATGATAGTGAAGCTAATTTCACCCCCAAGATAAAAGGTTCTGGAGAATGTGGGGTCTTATATCTGGCAGAGCCGCTTGATGCTTGTACGGTACTGACAAATAAAGCCGAACGACTTTCAAATGTCAGTGCCTCTTTTGTTTTGATTGTTAGAGGAGGATGTAGCTTTGAGGAAAAGGTCACAAGAGCACAAAACGCGGGCTTCAAATCTGCAATTGTCTATGATAATGAAGATTATGGTCTCCTAATTGCGATGGCAGGAAATTCAGTGGGTATAAATATACATGCTGTATTTGTATCCAAAGCTTCGGGGGAAATGCTAAAGAAATACACTGGATTGACTAATGTGGAACTGTGGATAATTCCAAGTTTTGAAAACACAGCATGGTTTATCATGTTAAAGTCATTCATTTCCCTACTAGGCATGTCTGCAGTTTTGGCCACTTGTTTCTTCATCCGGAGGCGTTGCATAAGGAGAGAAAGGCCTCGAGCATCTAGTATCTATAGAGTTCATGGAGTGAGTAGACGCGTAGTGAAAGCAATGCCAAGTTTAATATTTACTGCTGATTTAGAGGATAATTGTACGTCAGGAACATGTGCAATATGCCTTGTGGACTATAGCGTAGGAGAGAAGCTCAGGATTCTTCCCTGCCATCATAGGTTTCATGCTGCCTGTGTTGATACTTGGCTTACTTTATGGAGAACCTTTTGTCCAGTTTGTAAGCGTGATGCAATTACTGGTTTAACTGATCCACCACCTTCGGAGTCCACACCTTTACTTTCAGTGGCATCCTCTATATCATCTGGGAGATCATCGTTGGAGTCCCAACCTGTTTCTCATAACCACAGAGTAGCTAGTACCTCTAATGTTCATCCATCTTTTTGGTCCAACCACCAGCCACCTTCCCTAACCGTCAGCCAAAACTCAGCAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCTCCTTTGGATTCTTCTCGTTCCATGGCTTACCCATTTGATTCTGCCCAGTCTCTTTCGGAATGTGAAGTTGTTTAA 1146 0.4346 MGSTNLLAFFFALLSACYMGAAKVVLTEGNATLSFDDSEANFTPKIKGSGECGVLYLAEPLDACTVLTNKAERLSNVSASFVLIVRGGCSFEEKVTRAQNAGFKSAIVYDNEDYGLLIAMAGNSVGINIHAVFVSKASGEMLKKYTGLTNVELWIIPSFENTAWFIMLKSFISLLGMSAVLATCFFIRRRCIRRERPRASSIYRVHGVSRRVVKAMPSLIFTADLEDNCTSGTCAICLVDYSVGEKLRILPCHHRFHAACVDTWLTLWRTFCPVCKRDAITGLTDPPPSESTPLLSVASSISSGRSSLESQPVSHNHRVASTSNVHPSFWSNHQPPSLTVSQNSADLRNASQRSLASPLDSSRSMAYPFDSAQSLSECEVV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1172 381 Pfam Ring finger domain 233 276 IPR001841 -
Glsi01g1172 381 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 159 291 - -
Glsi01g1172 381 CDD PA_C_RZF_like 21 163 IPR044744 -
Glsi01g1172 381 Gene3D - 8 155 - -
Glsi01g1172 381 ProSiteProfiles Zinc finger RING-type profile. 234 276 IPR001841 -
Glsi01g1172 381 SMART ring_2 234 275 IPR001841 -
Glsi01g1172 381 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 22 156 - -
Glsi01g1172 381 Pfam PA domain 61 142 IPR003137 -
Glsi01g1172 381 SUPERFAMILY PA domain 76 143 IPR046450 -
Glsi01g1172 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 280 IPR013083 -
Glsi01g1172 381 SUPERFAMILY RING/U-box 233 286 - -
Glsi01g1172 381 MobiDBLite consensus disorder prediction 339 366 - -
Glsi01g1172 381 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 194 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1172 Glsi-ChrGlsi01 62666186 62674401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1172 19 367 C3H Transcription Factor Family AT1G22670 46.111 1.54e-91 280