Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1120 ATGCCAATGTCTGCAAGCTTCCAATGGTTCCTAGGTACAAAGATGGTTGAGGCAGGGGAAACAGGAGAAAGGCCTATTTTCCGAGATATTAGACGCTACTTCTGTGAATACTGTGGCATCTGCAGGTCCAAGAAGGCCTTAATAACCGCTCATATCAATACCTACCACAAGGAGGAGGTGGAGAACGCAAAACTAGATGGAGATTGCAAAGAAGAGGATGTAAAATCCAACACTTGCAAGGAATGTGGTGCTAGTTTTAAAAAACCTGCCTACTTAATGCAACACATGCAAAGCCATTCACTTGAGAGGCCATATGTGTGTACCATTGATGATTGCCAGGCAAGTTACAGAAGAAAGGACCATTTGACACGACACCTTCTACAGCATCAAGGGAAAACTTTTAAATGTCCAATTGATAATTGCAACCGTGAATTTTCTTTCCAAGGAAATATGACAAGACATGTGAAGGAATTTCATAATGAGAATTCCACCTCTATGAATGATGGAAGTCAGAAGCAGTATGTTTGCCCAGAAATTGGTTGTGGAAAGGTTTTCAAATTTGCATCAAAGCTACAAAAGCATGAAAATTCTCATGTTAAGCTGGAGTCAGTAGAGGTCGTATGCTTAGATCCTGATTGTATGAAGCATTTCACTAATGTCCAGTGCCTTCAAGCACATATTAAATCCTGCCACCAACATGTCACCTGTGAGACTTGTGGGAGAAAGCAGCTGAAGAAGAATATTAAGCGCCACCTCCATATGCATGAAACTGGTAGTTCATCAGAGGCGTTTAACTGTGAATACAAGGGTTGTAGCTGCACATTCTCAAGTAAATCTAATCTTCAAAAGCATGTGAAGGTTGTGCACTTTGAAGAAAAACCCTTTGTGTGTGGTTTTCCTGATTGTGGCATGAGATTTTCTTACAAACATGTGAGAGATAACCATGAAAAAACTGGGTCGCATGTTTATACCCTTGGGGATTTTGAAGAAGCTGATGAGGAATTCAGGTCAAGGCCAAGGGGAGGACGTAAGAGAAACTGCCCTACAGTTGAAATGTTAGTTAGGAAGAGAGTTACTCCACCTAGTCAATTTGATGAGTGGTTACTCATGCAGGAGGAGGATGAGTAG 1128 0.414 MPMSASFQWFLGTKMVEAGETGERPIFRDIRRYFCEYCGICRSKKALITAHINTYHKEEVENAKLDGDCKEEDVKSNTCKECGASFKKPAYLMQHMQSHSLERPYVCTIDDCQASYRRKDHLTRHLLQHQGKTFKCPIDNCNREFSFQGNMTRHVKEFHNENSTSMNDGSQKQYVCPEIGCGKVFKFASKLQKHENSHVKLESVEVVCLDPDCMKHFTNVQCLQAHIKSCHQHVTCETCGRKQLKKNIKRHLHMHETGSSSEAFNCEYKGCSCTFSSKSNLQKHVKVVHFEEKPFVCGFPDCGMRFSYKHVRDNHEKTGSHVYTLGDFEEADEEFRSRPRGGRKRNCPTVEMLVRKRVTPPSQFDEWLLMQEEDE 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1120 375 ProSitePatterns Zinc finger C2H2 type domain signature. 266 289 IPR013087 -
Glsi01g1120 375 SUPERFAMILY beta-beta-alpha zinc fingers 76 129 IPR036236 -
Glsi01g1120 375 ProSitePatterns Zinc finger C2H2 type domain signature. 208 231 IPR013087 -
Glsi01g1120 375 ProSitePatterns Zinc finger C2H2 type domain signature. 176 198 IPR013087 -
Glsi01g1120 375 Gene3D Classic Zinc Finger 161 234 - -
Glsi01g1120 375 SUPERFAMILY beta-beta-alpha zinc fingers 247 303 IPR036236 -
Glsi01g1120 375 SUPERFAMILY beta-beta-alpha zinc fingers 115 178 IPR036236 -
Glsi01g1120 375 ProSitePatterns Zinc finger C2H2 type domain signature. 136 159 IPR013087 -
Glsi01g1120 375 Gene3D Classic Zinc Finger 105 131 - -
Glsi01g1120 375 Gene3D Classic Zinc Finger 24 104 - -
Glsi01g1120 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 203 IPR013087 -
Glsi01g1120 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 294 IPR013087 -
Glsi01g1120 375 Gene3D Classic Zinc Finger 237 291 - -
Glsi01g1120 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 164 IPR013087 -
Glsi01g1120 375 ProSitePatterns Zinc finger C2H2 type domain signature. 297 321 IPR013087 -
Glsi01g1120 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Glsi01g1120 375 ProSitePatterns Zinc finger C2H2 type domain signature. 107 129 IPR013087 -
Glsi01g1120 375 Gene3D Classic Zinc Finger 132 160 - -
Glsi01g1120 375 Pfam Zinc finger, C2H2 type 78 99 IPR013087 -
Glsi01g1120 375 Pfam Zinc finger, C2H2 type 134 159 IPR013087 -
Glsi01g1120 375 Pfam Zinc finger, C2H2 type 264 289 IPR013087 -
Glsi01g1120 375 Pfam Zinc finger, C2H2 type 174 198 IPR013087 -
Glsi01g1120 375 Pfam Zinc finger, C2H2 type 105 129 IPR013087 -
Glsi01g1120 375 SUPERFAMILY beta-beta-alpha zinc fingers 171 200 IPR036236 -
Glsi01g1120 375 PANTHER ZINC FINGER PROTEIN 20 362 - -
Glsi01g1120 375 FunFam Zinc finger 45-like 75 100 - -
Glsi01g1120 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 134 IPR013087 -
Glsi01g1120 375 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Glsi01g1120 375 Gene3D Classic Zinc Finger 292 318 - -
Glsi01g1120 375 SMART c2h2final6 134 159 IPR013087 -
Glsi01g1120 375 SMART c2h2final6 33 56 IPR013087 -
Glsi01g1120 375 SMART c2h2final6 77 99 IPR013087 -
Glsi01g1120 375 SMART c2h2final6 174 198 IPR013087 -
Glsi01g1120 375 SMART c2h2final6 234 255 IPR013087 -
Glsi01g1120 375 SMART c2h2final6 206 231 IPR013087 -
Glsi01g1120 375 SMART c2h2final6 295 321 IPR013087 -
Glsi01g1120 375 SMART c2h2final6 105 129 IPR013087 -
Glsi01g1120 375 SMART c2h2final6 264 289 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1120 Glsi-ChrGlsi01 61128500 61131077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1120 101 324 C2H2 Transcription Factor Family AT1G72050 51.812 4.70e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi01g1120 zf-C2H2 0.0028 CL0361