Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1087 ATGTTTGCGGTAGTTGATTCAATGGAGAGGAACTCAGAAAGGTGCTTAGATTCTCAATTATGGCACGCCTGTGCTGGTGCCATCATTCAAATGCCACCAATCAACTCGAAAGTCTTCTACTTTCCTCAGGGCCACGCAGAGCACGCACTTGGGAAAGTTGATTTTGGGCGAATCCGAATTCCCTCACTCATTCCCTGCAGGGTTTCTGCTATAAAATACATGGCAGACCCTGACACAGACGAGGTCTACGTGAAAATGAGGTTGACCCCTCTGAGAGAAGATGAATTGGATTTTGAAGATGATCGCTTCCTGGGAAACGATGCTATTGAGAGTCAAGAAAAACACTCTTCCTTTGCCAAGACATTGACACAATCTGATGCCAATAATGGTGGAGGCTTCTCTGTGCCTCGTTATTGTGCAGAGACTATATTTCCAAGGTTGGATTATTCTGCAGAACCTCCAGTTCAGACCATTATTGTCAAGGATGTGCATGGACAGAGCTGGAAGTTTAGGCATATCTATAGAGGGACTCCTCGCCGGCACCTTCTAACGACTGGATGGAGCAATTTTGTGAACCAAAAGAAGCTTGTTGCTGGGGATTCTATTGTATTTCTTAGGGCAGAGAATGGGGATCTTTGTGTTGGAATAAGAAGGGCTAAGAAAGGGATTGGTGGTGGGACTGAATACTCAACTGGTTGGAACCAAGCAGCCCCTCTTTATGGTGGGCGTTCTTCTGGTTTTTTTTGTGAGAATGAGAACACGTTGATGAGGAGGAGACTAGGCGATGAGGAATTGAAGGGAAGAGTGCCAGCTGAATCTGTTGTTGAAGCTGTAACTTCTGGTCTTAACAAACAGCCCTTCGAGGTTGTCTACTACCCGCGTGCTAGCACGCCGGAGTTTTGTGTCAAGGCCTCGGCTGTGAAGGCTGCAATGCAAATTAAGTGGTGTTCTGGGATGAGATTCAAAATGCCTTTTGAAACTGAGGATTCATCTAGGATAAGCTGGTTCATGGGAACAATATCTTCCGTTCAGGTAGTAGATCCTATTCGTTGGCCTGATTCTCCATGGCGCCTTTTACAGATAGTGTGGGATGAACCAGATTTACTTCAGAATGTTAAGTGTGTAAACCCTTGGCTGGTTGAACAAGTCACAAACACACCAACCTTCCATCTATCTCCCTTCTCACCACCAAGAAAGAAATCACGGTTTCTTCAGCCTGCGGATTTTCCCCTCATCAACCAAATTCCAATGCCATCGTTCCCAAGCAATCTTCTTAATCATACTAACTCTCTATGTAATAGTCAAGCCAATAGTTCAGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTATCTCCAATGGATATCCCATTCGACAAGCTGCAATCAGATATGCTTCTGCGTGGATTTCCATGGCTTGACAATGCAGTCCAGCCTGTTAGAACTCCGTTCAGTACTTATAAGAGCAGCTCTAAGAACAATGTTGATATATCAGGCTTGTTGACTGAAGGATATCCTGGCCAGAGTTTGAAAACACCCGTTGAAGCAAAAGCCCCACACATCGTGTTGTTTGGCCAACTCATTCATACTGAGCAGCAGACTTCAAGTAGTTTCTCTGCTAGTGCAAATGGGAATAGCTTATCAGAAGGGAATTCACTGAAGACATCAAACGCTTCTGATGGCTTAGGTTCTGCTTTGCATCAAAATAGTCCAATAGAGAATTCCTCTGACGGAGGGTCTCCCTGGTACAAAGATCAGCGCAAATCTGATCTGCGAACGGACAATGTTAACCTCCTATGTTTGGCATTATAA 1815 0.4501 MFAVVDSMERNSERCLDSQLWHACAGAIIQMPPINSKVFYFPQGHAEHALGKVDFGRIRIPSLIPCRVSAIKYMADPDTDEVYVKMRLTPLREDELDFEDDRFLGNDAIESQEKHSSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIVKDVHGQSWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGTEYSTGWNQAAPLYGGRSSGFFCENENTLMRRRLGDEELKGRVPAESVVEAVTSGLNKQPFEVVYYPRASTPEFCVKASAVKAAMQIKWCSGMRFKMPFETEDSSRISWFMGTISSVQVVDPIRWPDSPWRLLQIVWDEPDLLQNVKCVNPWLVEQVTNTPTFHLSPFSPPRKKSRFLQPADFPLINQIPMPSFPSNLLNHTNSLCNSQANSSAGIQGARHAQFGLSPMDIPFDKLQSDMLLRGFPWLDNAVQPVRTPFSTYKSSSKNNVDISGLLTEGYPGQSLKTPVEAKAPHIVLFGQLIHTEQQTSSSFSASANGNSLSEGNSLKTSNASDGLGSALHQNSPIENSSDGGSPWYKDQRKSDLRTDNVNLLCLAL 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1087 604 Pfam Auxin response factor 283 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi01g1087 604 CDD B3_DNA 117 218 IPR003340 GO:0003677
Glsi01g1087 604 FunFam Auxin response factor 315 388 - -
Glsi01g1087 604 MobiDBLite consensus disorder prediction 536 589 - -
Glsi01g1087 604 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Glsi01g1087 604 SUPERFAMILY DNA-binding pseudobarrel domain 108 219 IPR015300 -
Glsi01g1087 604 FunFam Auxin response factor 116 220 - -
Glsi01g1087 604 Gene3D - 314 387 - -
Glsi01g1087 604 MobiDBLite consensus disorder prediction 536 583 - -
Glsi01g1087 604 Gene3D - 116 220 IPR015300 -
Glsi01g1087 604 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 559 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi01g1087 604 SMART B3_2 118 220 IPR003340 GO:0003677
Glsi01g1087 604 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1087 Glsi-ChrGlsi01 59679165 59681682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1087 1 585 B3 DNA Binding Superfamily AT4G30080 56.951 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi01g1087 B3 4.4e-23 CL0405