Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1086 ATGATCGGAACCAACTTCATGGACGAGATAGACTGCGGCAGCTTCTTCGACAACATCGACGACCTCCTTGATTTCCCCGCCGAAGACGTCGAAGGTGCCGCCTTGCCGGCATCAACCGGGACCTGCCACTCGTTTCCGAGCATTTGGCCCGTCGAATCCGAGTCATTACCCGGCTCCGACCCGGTTTTCATCGGGATCAGCGCGGCAGACCTCTCCGTTCCGTATGAAGACGTTGTCCAGTTAGAATGGCTGCCAAACTTTGTGGAGGACTCCTCTTGTGGGAGCCTCACCTTGAAGAAAGTGGAGCCACCCTGCACCAACAATGACCCGGCGCATAACCAATTCCAGACATCCAGCCCGGTTTCTGTCCTCGAAAACAGCAGCTCCAGCTCTGGGGAGAAGACTGCGCCTCGCAGCCCAGAAATTTATGTTCCTATACCATGCGTCCGTGCACGTAGCAAGCGTCCTCGCCCTGCGAGCTTCAACCCTGGTCCTGTGATGCAACTTATCCACCCTCCTTTTGTTGGCGAAAAGACCCAGCCTAATGTTGTGTCAAAGGCCTCTTCAAATTCTGAGAATTTCAGAGAGTCTCATCCTGTAATCAAGATACCAAAGCAAATTTCTGGAGAGCATAAGAAGAATAAGAGAATCAAACAGTCTTTTCCATTAGGTCCAGCGGATGTGAACCGGAATGTGCCATCACAAGCAGTTAGGAAATGCATGCATTGTGAGATAACTAAGACACCACAGTGGAGGGCTGGGCCATTGGGGCCGAAAACCCTTTGCAATGCATGTGGTGTTCGCTACAAGTCAGGCCGGCTCTACCCCGAATACCGTCCTGCCGCAAGTCCAACCTTTTGCCCATCTTTGCACTCTAATTCCCATCAGAAGGTTCTTGAAATGAGAAGCAAGGCCGGCAAAACAGCTGCTTCTATGGCAACCTATTCAGCTGCCTCTCCAGAACTCATTCCGAACACAAACAGCAGCCTTACCCTGGAATACATATGA 1008 0.5179 MIGTNFMDEIDCGSFFDNIDDLLDFPAEDVEGAALPASTGTCHSFPSIWPVESESLPGSDPVFIGISAADLSVPYEDVVQLEWLPNFVEDSSCGSLTLKKVEPPCTNNDPAHNQFQTSSPVSVLENSSSSSGEKTAPRSPEIYVPIPCVRARSKRPRPASFNPGPVMQLIHPPFVGEKTQPNVVSKASSNSENFRESHPVIKIPKQISGEHKKNKRIKQSFPLGPADVNRNVPSQAVRKCMHCEITKTPQWRAGPLGPKTLCNACGVRYKSGRLYPEYRPAASPTFCPSLHSNSHQKVLEMRSKAGKTAASMATYSAASPELIPNTNSSLTLEYI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1086 335 PIRSF Txn_fac_GATA_plant 1 329 IPR016679 GO:0003677|GO:0005634|GO:0045893
Glsi01g1086 335 FunFam GATA transcription factor 230 316 - -
Glsi01g1086 335 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Glsi01g1086 335 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Glsi01g1086 335 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Glsi01g1086 335 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
Glsi01g1086 335 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 238 297 - -
Glsi01g1086 335 MobiDBLite consensus disorder prediction 107 136 - -
Glsi01g1086 335 Gene3D - 234 284 IPR013088 GO:0006355|GO:0008270
Glsi01g1086 335 PANTHER GATA TRANSCRIPTION FACTOR 14 310 - -
Glsi01g1086 335 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Glsi01g1086 335 MobiDBLite consensus disorder prediction 104 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1086 Glsi-ChrGlsi01 59514477 59517653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1086 19 304 C2C2-Gata Transcription Factor Family AT4G32890 36.275 4.85e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi01g1086 GATA 6.6e-15 CL0167