Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1072 ATGTTGCTTCTTCCTGTTTCCTACCTAATTTCCTTAAAACTAGGAGCCAACAACTCCAAAAGATTAGGACAACCCTACATGCATGTGAAGCAGAAGGAGGAGGATATAGCTATATGTGAATGCAAATATAATGCCAGTGACCCTGATAATGCTAGTGGGGATAGATGTCTCAATGTATTAACCAGCTCTGAATGCACCCCTGGATACTACCCCTGTGGTATCTTTTGCAAAAATCAGCAGAAGGAGGACGATATAGCTATATGTGAATGCAAATATAATGCCAGTGACCCTGATAATGCTTGTGGGGATAGATGTCTCAATGTATTAACCAGCTCTGAATGCACCCCTCGATACTGCCCCTGTGGGATCTTTTGCAAAAATCAGAGATCTCAGAAGTGTGAATATGCAAAAACAAAGTTGGTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGAACATTAAGGCAGGGCAATTTATCATCGAATACTGTGGAGAAGTAATTTCATGGAAAGAGGCTAAGCGTAGGTCCCAGGCTAATGAAACTCAAGGTCTTAAGGATGCATTTATTATTTTTCTTAATGCCTCTGAATCTATTGATGCAACAAGAAAAGGAAGCCTTGGTAGATTTATAAATCATTCCTGTCAGCCAAATTGCGAGACACGGAAATGGAATGTCTTGGGGGAGATAAGAGTTGGAATATTTGCAAAACAAGATATTCCTATTGGAGCTGAATTGGCATATGATTATAACTTTGAATGGTTTGGTGGTGCAAAGATCCGTTGCCTCTGTGGTGCAGCCAAATGTTCTGGATTCCTTGGAGCAAAATCTTGTGGTTTTCAGGTAAGTTTTGATGAAAGCTAG 870 0.4069 MLLLPVSYLISLKLGANNSKRLGQPYMHVKQKEEDIAICECKYNASDPDNASGDRCLNVLTSSECTPGYYPCGIFCKNQQKEDDIAICECKYNASDPDNACGDRCLNVLTSSECTPRYCPCGIFCKNQRSQKCEYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEAKRRSQANETQGLKDAFIIFLNASESIDATRKGSLGRFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPIGAELAYDYNFEWFGGAKIRCLCGAAKCSGFLGAKSCGFQVSFDES 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1072 289 ProSiteProfiles AWS domain profile. 83 134 IPR006560 GO:0005634|GO:0042054
Glsi01g1072 289 SMART set_7 136 259 IPR001214 GO:0005515
Glsi01g1072 289 ProSiteProfiles AWS domain profile. 34 85 IPR006560 GO:0005634|GO:0042054
Glsi01g1072 289 ProSiteProfiles Post-SET domain profile. 260 276 IPR003616 -
Glsi01g1072 289 Gene3D SET domain 77 282 IPR046341 -
Glsi01g1072 289 Pfam AWS domain 47 80 IPR006560 GO:0005634|GO:0042054
Glsi01g1072 289 Pfam AWS domain 96 133 IPR006560 GO:0005634|GO:0042054
Glsi01g1072 289 SMART shorttest3 83 135 IPR006560 GO:0005634|GO:0042054
Glsi01g1072 289 SMART shorttest3 34 82 IPR006560 GO:0005634|GO:0042054
Glsi01g1072 289 SUPERFAMILY SET domain 86 273 IPR046341 -
Glsi01g1072 289 ProSiteProfiles SET domain profile. 131 253 IPR001214 GO:0005515
Glsi01g1072 289 FunFam Histone-lysine N-methyltransferase 78 286 - -
Glsi01g1072 289 SMART PostSET_3 260 276 IPR003616 -
Glsi01g1072 289 Pfam SET domain 147 253 IPR001214 GO:0005515
Glsi01g1072 289 PANTHER SET DOMAIN PROTEINS 27 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1072 Glsi-ChrGlsi01 58484202 58486281 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1072 117 275 C2H2 Transcription Factor Family AT2G23740 34.426 1.63e-19 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi01g1072 SET 3.7e-19 No_clan