Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1071 ATGCTCTTTGGCAAAGGGGAGTTTGAATTTAAATGTGCCTCCAAAATCGAAAGACAAGAGCTTGGAACTAGAGAGAATCATTTTGAAGTGTGGTTCGAATTTGTAAGTTTAAGAGCAGAAACTTCGAAGCAATCGGTGTATGAATATCCATTGCATTCAAAACGAAAATTTTGGAGATTCAAGTTTTGTTACTTCTTGGGTATTAGCGCCGGTCCTCATCTCCTTTGGTTGCGGTTGCCAGCGGCTTTGACTCAAGAAGATGTTTGTATGCAACTTACCTATGACAGTCATCTAAAGAGTCGTTCCAATGCAATTCTTGGAAATGGTATGGAATGGCTTATATCTGACCTCTCAAAATTCAGGCATTTTGCTTCATCCAGGCATGTGAAGCAGAAGGAGGAGGATATAGCTATATGTGAATGCAAATATAATGCCAGTGACCCTGATAATGCTTGTGGGGATAGATGTCTCAATGTATTAACCAGCTCTGAATGCACCCCTGGATACTGCCCCTGTGGCCGTGGATGGGGTCTTTTGGCTGATGAGAACATTAAGGCAGGGCAATTTATCATCGAATACTGTGGAGAAGTAATTTCATGGAAAGAAGCTAAGCGTAGGTCCCAGGCTTATGAAACTCAAGGTCTCAAGGATGCATTTATTATTTTTCTTAATGCCTCTGAATCTATTGATGCAACAAGAAAAGGAAGCCTTGGTAGATTTATAAATCATTCCTGTCAGCCAAATTGCGAGACACGGAAATGGAATGTCTTGGGGGAGATAAGAGTTGGAATATTTGCAAAACAAGATATTCCTATTGGAGCTGAATTGGCATATGATTATAACTTTGAATGGTTTGGTGGTGCAAAGGTCCGTTGCCTCTGTGGTGCAGCCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGGTAAGTTTTGATGAAAGCTAG 954 0.4099 MLFGKGEFEFKCASKIERQELGTRENHFEVWFEFVSLRAETSKQSVYEYPLHSKRKFWRFKFCYFLGISAGPHLLWLRLPAALTQEDVCMQLTYDSHLKSRSNAILGNGMEWLISDLSKFRHFASSRHVKQKEEDIAICECKYNASDPDNACGDRCLNVLTSSECTPGYCPCGRGWGLLADENIKAGQFIIEYCGEVISWKEAKRRSQAYETQGLKDAFIIFLNASESIDATRKGSLGRFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPIGAELAYDYNFEWFGGAKVRCLCGAAKCSGFLGAKSRGFQVSFDES 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1071 317 Pfam AWS domain 147 173 IPR006560 GO:0005634|GO:0042054
Glsi01g1071 317 ProSiteProfiles SET domain profile. 163 281 IPR001214 GO:0005515
Glsi01g1071 317 ProSiteProfiles Post-SET domain profile. 288 304 IPR003616 -
Glsi01g1071 317 Gene3D SET domain 114 313 IPR046341 -
Glsi01g1071 317 Pfam SET domain 175 281 IPR001214 GO:0005515
Glsi01g1071 317 PANTHER SET DOMAIN PROTEINS 128 310 - -
Glsi01g1071 317 SMART PostSET_3 288 304 IPR003616 -
Glsi01g1071 317 SMART shorttest3 134 176 IPR006560 GO:0005634|GO:0042054
Glsi01g1071 317 ProSiteProfiles AWS domain profile. 134 188 IPR006560 GO:0005634|GO:0042054
Glsi01g1071 317 SUPERFAMILY SET domain 134 301 IPR046341 -
Glsi01g1071 317 SMART set_7 161 287 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1071 Glsi-ChrGlsi01 58465117 58469732 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1071 174 303 C2H2 Transcription Factor Family AT2G23740 33.108 1.23e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi01g1071 SET 2.2e-19 No_clan