Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1069 ATGCTTCCTATTAGCTGCTTTCTCTTATTATGCCTCTTGATATCTTTTTCTCCCTCTATCAAAGCTGTGTTCAACCTCAGCTTACCCCACCAACATCCTTACCCTGAAAATGTGGTTAAGGAGGTTCAAAGGAGACTCAACGCATCTCTTTCCAGAAGACAACTCCTCTCTGTCTACAAAAACGACCAAGCTCCCAGCTGCATCACCGGCAACCCCATCGACGATTGCTGGCGGTGCGACCCCAACTGGGCCGCGAACCGCCAGAAGCTCGCCGACTGCGGTATTGGGTTCGGCTCTGACGCCATAGGCGGCAAGGGCGGCCAGACCTACGTCATCACCGACCCCTCTGATTCTGACCCGGCAAACCCAGTTCCGGGAACCCTCCGGCACGCCGTCATCCAAGACGTGCCCCTATGGATCGTCTTCTCCAGCGACATGAACATCACCCTTGAGCACGAGCTCATCTTCAACAGCTTCAAGACCATCGACGGACGTGGCACCAATGTCTATATCACCGGTAGTGGCTGCATCACCCTCCAGTACGTCTCCAATATCATCATCCACAATGTTCACATCCACCATTGCAGGCCCTCAGACAATTCTATCATACGGGTGAGTCCAACCATCGTAGGGTGGAGAGGCAAATCAGACGGTGATGGGGTATCCATCCATGGCTCTCGGAAGATCTGGATCGACCATTGCTCAGTGTCATACTGCATGGACGGTCTGATTGATGTGATAATGGGGTCCACAGGGATAACGATTTCGAACAACCATTTTTCCCACCATGACAAGGTGATGCTGTTGGGGCACGACGATAGTTACATGCCTGATAAGGGAATGCAGGTGACCATAGCCTTCAACCACTTCGGTGAGGGGCTGGTGCAGCGTATGCCACGGTGCAGACACGGCTATATACACGTGGTCAACAATGATTTCACGCAGTGGAAGATGTACGCTATCGGCGGTAGTGCTAACCCCACCATAAACAGCCAGGGCAACCGCTACACTGCTCCCCCGGATCCTAATGCTAAAGAGGTGACGAAGCGCGTGGACACAGACGAAAGAGAGTGGGCAGGTTGGAATTGGAGGACCGATGGGGACGTAATGGTAAATGGAGCATTCTTCGTGCCGTCAGGGGCAGCGGTGAGCCCACAGTATGCCTTAGCCTCCAGTGTCGAACCCAAAGCAGCCGTGCAGATCGACCAGCTAACCATCAACGCCGGTGTCTTCGGTGATCCAAGGGATAGTGGGGATATATATACCGGATTCAACGGTGATGGGACCTTAACCGGTGCCACCAATAACGGCAATGGAGGGTCTAGCAGTGATGACGATGGGGACTTCTTCGGAACGATATTAAAAAAAAATAATAGCAGCGAAGCAGCACCACCCTTCTTACCCATTGTTTCAAACTTTTTGTTTCTTTTAATTATTTTCATTTTGCACACTAGCACCAACCATGGCGTCCTATAA 1476 0.5183 MLPISCFLLLCLLISFSPSIKAVFNLSLPHQHPYPENVVKEVQRRLNASLSRRQLLSVYKNDQAPSCITGNPIDDCWRCDPNWAANRQKLADCGIGFGSDAIGGKGGQTYVITDPSDSDPANPVPGTLRHAVIQDVPLWIVFSSDMNITLEHELIFNSFKTIDGRGTNVYITGSGCITLQYVSNIIIHNVHIHHCRPSDNSIIRVSPTIVGWRGKSDGDGVSIHGSRKIWIDHCSVSYCMDGLIDVIMGSTGITISNNHFSHHDKVMLLGHDDSYMPDKGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTQWKMYAIGGSANPTINSQGNRYTAPPDPNAKEVTKRVDTDEREWAGWNWRTDGDVMVNGAFFVPSGAAVSPQYALASSVEPKAAVQIDQLTINAGVFGDPRDSGDIYTGFNGDGTLTGATNNGNGGSSSDDDGDFFGTILKKNNSSEAAPPFLPIVSNFLFLLIIFILHTSTNHGVL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1069 491 Pfam Pectate lyase 155 334 IPR002022 -
Glsi01g1069 491 SUPERFAMILY Pectin lyase-like 71 410 IPR011050 -
Glsi01g1069 491 Gene3D - 70 412 IPR012334 -
Glsi01g1069 491 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Glsi01g1069 491 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Glsi01g1069 491 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Glsi01g1069 491 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Glsi01g1069 491 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Glsi01g1069 491 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Glsi01g1069 491 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Glsi01g1069 491 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Glsi01g1069 491 SMART amb_all 145 342 IPR002022 -
Glsi01g1069 491 PANTHER PECTATE LYASE 18-RELATED 31 411 IPR045032 GO:0030570
Glsi01g1069 491 FunFam Pectate lyase 70 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1069 Glsi-ChrGlsi01 58042165 58050588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1069 24 424 Polysaccharide Lyase AT3G54920 65.617 0.0 558