Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1060 ATGGCTGGAAAGGAAGAGAATCGAATATTTGTTGGAGGGTTATCTTGGGATGCGTCGGAGCGTCAGCTCGAGCATGCCTTTAGCCGTTATGGCAAAATTCTTGAATGCCAGATCATGTTGGAAAGAGACACAGGCCGTCCACGTGGATTTGGGTTTATTACATTTGCAGATCGCAGGGGAATGGAAGATGCAATCAAGGAAATGCATGGACATGAACTTGGTGATCGCATCATCTCTGTCAACAGGGCCCAGCCCAAAATGGGGGCTGATGATCTAGACCATGGTTACCGGGCTGGCTACTCATCTGGTGGTAGGGGAAGCTATGGGGTGGGGGACAGGGTAGGACAAGATGACTGCTTTAAATGTGGGCGTCCAGGGCACTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGGTCGTGGTAGGGGTGGTGACTCTTTTTCTTCACGTCCTAGGTTTGGAGGTGCTGGTGGCCATGGGGATCGCCATAGTGGTGAACGTGAACGGTATATTGATGATCGTTATGATGGCGGACGTTATGGAGATAAAGATCATATTGACAGCCGCAATCACAAATATGGTAGCCGTGATCACTATGTTAGAGACAGGTACCCAGCTAGTGGAGATCGATATGCAAGTGATAGATATGGTGGTTCAGATCGTTGCCCCCAAAATGGTTATGGCAAAGATAGAGCCTTTGACAGGTACAGTGGTCCACGAGGAGGTACAGATAGGTATGGAAGTAGAATGCCAGCTCGAGACGAAGGAAGGAGTTATAGGGGTAGGCCAGGTCCTTATGACCGCCCAAGTGGGGGTGGTCGTCCATCTTCATTTGACCGTTATTGA 843 0.5006 MAGKEENRIFVGGLSWDASERQLEHAFSRYGKILECQIMLERDTGRPRGFGFITFADRRGMEDAIKEMHGHELGDRIISVNRAQPKMGADDLDHGYRAGYSSGGRGSYGVGDRVGQDDCFKCGRPGHWARDCPLAGGGRGRGGDSFSSRPRFGGAGGHGDRHSGERERYIDDRYDGGRYGDKDHIDSRNHKYGSRDHYVRDRYPASGDRYASDRYGGSDRCPQNGYGKDRAFDRYSGPRGGTDRYGSRMPARDEGRSYRGRPGPYDRPSGGGRPSSFDRY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1060 280 Gene3D - 116 142 - -
Glsi01g1060 280 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Glsi01g1060 280 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Glsi01g1060 280 MobiDBLite consensus disorder prediction 133 280 - -
Glsi01g1060 280 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 272 - -
Glsi01g1060 280 SUPERFAMILY Retrovirus zinc finger-like domains 104 138 IPR036875 GO:0003676|GO:0008270
Glsi01g1060 280 MobiDBLite consensus disorder prediction 246 261 - -
Glsi01g1060 280 Gene3D - 1 115 IPR012677 -
Glsi01g1060 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Glsi01g1060 280 SUPERFAMILY RNA-binding domain, RBD 4 109 IPR035979 GO:0003676
Glsi01g1060 280 SMART rrm1_1 8 81 IPR000504 GO:0003723
Glsi01g1060 280 FunFam glycine-rich RNA-binding protein RZ1C 1 115 - -
Glsi01g1060 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Glsi01g1060 280 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Glsi01g1060 280 MobiDBLite consensus disorder prediction 155 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1060 Glsi-ChrGlsi01 57309875 57314907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1060 9 88 C2H2 Transcription Factor Family AT2G19380 40.000 1.36e-13 68.9