Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1055 ATGGGTGGGAATGAGAATTCAAAGGCTGTGGTGGTAGATCGATTGCTTAATTCCATCAAGGAGATTTCTGGGCTACCCGAGTGTCAAAACATTTGCAAGAGGATGTATGGGAATTTGGTTCGGAGGGTGAAGCTATTGAGTCCTTTGTTTGAGGAATTGAAGGATAGTGATGAATCGCTGAGCGATGAAGAACTTGGATCCTTTGAATCGTTGAGGATTGCTTTGGATTCAGCTAAGAGCCTTCTCAAGTTCGCGAACCAAGGGAGTAAGCTTGATCGGGCTTTGCGGAGGAATGAAATGGCAGAAAAGTTCCAACATATAAATGAAAACATTGATGCAGCATTGAGTGAACTTCACTACAACAAACATGAGATATCAGAGGAAGTTCAAGAACAGATTGAACTTGTGCATGCTCAATTCAAAAGAGCAAAAGCTAGAATGGAATTAGCTGATTTACAACTAGACTTGGATTTAGCCATAGCACAAAAAGACAAAGAACCTGACCCTGCAGTACTCAAAAGGCTTTCTGAGAAGTTGCATCTGAGGACTATAAATGACCTGAAGAAAGAGTCAGGTGAATTGCATGAATGGATAATCTCAAGTGGTGGAGAACCAGAGGACTATTTTGAGATGATGTCATCCCTTCTTAAGAAGCTGAAGGACTTTGTGTCCACAGAAAACCCTGAAGTTGACCCTTGTGAGGGTGAAAAAGTTTCAATTAAGCACAGATCTCCTGTGATCCCAGATGATTTTAGATGCCCAATATCTCTTGAACTAATGAAAGATCCCGTAATTGTCTCTACTGGACAGACGTATGAAAGATCCTGCATTCAAAAATGGGTTGATGCTGGGCATAAAACATGTCCCAAGACGCAGCAGACACTTGTGCACACAGCCCTAACCCCTAACTATGTTTTGAAGAGTCTGATTTCTTTATGGTGTGAAAGCAATGGTGTTGAGCTACCAAAGAAACAAGGGAGCTGTAGAACAAAGAAGTCTGGAAGCAATCCTTCAGATTGTGATCGAGCAGCTATCAGTGTTTTACTGGAAAGACTAACAAATGATAATATGGAACAGCAAAGGGCAGCTGCTGGTGAGCTCCGATTGCTGGCTAAGAGGAATGCAGATAATAGAGTATGTATAGCTGAGGCAGGAGCGATACCACTTCTTGTAGATCTGCTGTCTTCCTCAGATCCTCGAACCCAGGAACATGCTGTTACAGCGCTTCTTAATCTGTCCATCAATGACAGTAACAAAGGAACCATTGTAAATGCAGGAGCTATACCAGATATTGTAGATGTACTGAAAAGTGGTAGCATGGAGGCTAGAGAAAATGCAGCTGCGACTCTCTTTAGTTTATCTGTCCTAGATGATAATAAGATTGCAATAGGAGGAGCTGGGGCTATCCCAGCTTTGATTAGCTTGCTTTGTGAAGGTACTCCCAGAGGTAAAAAGGATGCTGCTACTGCTATTTTTAATCTTTGTATCTATCAGGGAAACAAAGCAAAAGCTGTGAAGGCTGGTATAGTGGGCCCACTGATTACATTTCTTAGTGATGCTGGAGGTGGGATGGTAGATGAAGCGCTAGCTATACTGGCAATCCTTGCAAGCCATCATGAAGGCAGGACAACAATTGGTCAGTCTGGACCGATTCCTATTTTGGTTGTGATTGTACGAACTGGTTCCCCACGCAACAGGGAGAATGCTGCTGCTGTGTTGTGGTCACTTTGCACGGGAGATCTACTGCAGTTGAAACTAGCAAAGGACCTTGGTGCAGAAGAAGTACTGCAGGAATTATCAGAAAATGGCACTGACAGGGCCAAAAGAAAGGCTGGAAGTATATTAGAACTCTTCCAGCGAATGGAAGGGAATGAGAATTTGCAAAAGTCATAG 1893 0.4295 MGGNENSKAVVVDRLLNSIKEISGLPECQNICKRMYGNLVRRVKLLSPLFEELKDSDESLSDEELGSFESLRIALDSAKSLLKFANQGSKLDRALRRNEMAEKFQHINENIDAALSELHYNKHEISEEVQEQIELVHAQFKRAKARMELADLQLDLDLAIAQKDKEPDPAVLKRLSEKLHLRTINDLKKESGELHEWIISSGGEPEDYFEMMSSLLKKLKDFVSTENPEVDPCEGEKVSIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWVDAGHKTCPKTQQTLVHTALTPNYVLKSLISLWCESNGVELPKKQGSCRTKKSGSNPSDCDRAAISVLLERLTNDNMEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVDLLSSSDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKSGSMEARENAAATLFSLSVLDDNKIAIGGAGAIPALISLLCEGTPRGKKDAATAIFNLCIYQGNKAKAVKAGIVGPLITFLSDAGGGMVDEALAILAILASHHEGRTTIGQSGPIPILVVIVRTGSPRNRENAAAVLWSLCTGDLLQLKLAKDLGAEEVLQELSENGTDRAKRKAGSILELFQRMEGNENLQKS 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1055 630 Gene3D - 524 629 IPR011989 -
Glsi01g1055 630 SMART arm_5 374 414 IPR000225 GO:0005515
Glsi01g1055 630 SMART arm_5 456 496 IPR000225 GO:0005515
Glsi01g1055 630 SMART arm_5 497 537 IPR000225 GO:0005515
Glsi01g1055 630 SMART arm_5 415 455 IPR000225 GO:0005515
Glsi01g1055 630 SMART arm_5 538 578 IPR000225 GO:0005515
Glsi01g1055 630 Pfam Armadillo/beta-catenin-like repeat 374 413 IPR000225 GO:0005515
Glsi01g1055 630 Pfam Armadillo/beta-catenin-like repeat 457 495 IPR000225 GO:0005515
Glsi01g1055 630 SUPERFAMILY RING/U-box 246 322 - -
Glsi01g1055 630 Gene3D - 419 523 IPR011989 -
Glsi01g1055 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 427 IPR000225 GO:0005515
Glsi01g1055 630 SUPERFAMILY ARM repeat 344 618 IPR016024 -
Glsi01g1055 630 CDD RING-Ubox_PUB 248 300 IPR045210 -
Glsi01g1055 630 Coils Coil 126 162 - -
Glsi01g1055 630 Gene3D - 10 122 IPR036537 GO:0007166
Glsi01g1055 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Glsi01g1055 630 FunFam RING-type E3 ubiquitin transferase 247 320 - -
Glsi01g1055 630 FunFam RING-type E3 ubiquitin transferase 8 121 - -
Glsi01g1055 630 CDD MLKL_NTD 15 141 - -
Glsi01g1055 630 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Glsi01g1055 630 FunFam RING-type E3 ubiquitin transferase 329 624 - -
Glsi01g1055 630 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Glsi01g1055 630 PANTHER U BOX DOMAIN-CONTAINING 35 618 - -
Glsi01g1055 630 Gene3D - 339 418 IPR011989 -
Glsi01g1055 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 320 IPR013083 -
Glsi01g1055 630 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1055 Glsi-ChrGlsi01 57143120 57146830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1055 431 626 U-box Gene Family AT3G54850 27.919 5.29e-10 60.5