Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1039 ATGCCTCCTCCTATTCCCCAACACCACCATGCCTCCGCTGTTCTTCAATTCCAACGGAAGCCGAGCCCCAAACTCCTTTCCCTCCTTCTTAAAGCCATCATTATGACCATTCTTACCTCCCTCTTCTTCCTTTTTCTCGGCTTCGCTGCCTTCGTGCTTCTTCACCTCTGCTTCATCGGCGGTGTCCTCCACCGCCTTCGCTCCCCCGCCACGATCCAACTCGGAACCTCCTCAAATGGGATCGCGCCTCAGGATGTAAAGAAGCTTCCACACTTCCGGGTTTCCATGGGGACGGAACCCGGATCCGAAACTCAATGCGTCGTCTGCTTGGATGGCTTCCGGAACGGCCACTGGTGCAGAAAGCTCGCGGGATGTGGTCATGTTTTCCACAGGAGATGTGTGGATACGTGGTTGGTCAAGGTGGCTGCATGTCCTACCTGCAGGACTCCTGTTCGATTAAATGCCGGGGCTTTAGGTTCTGCTCTAGATATCCAAACAGAGGAGGCTAACCAATTTTGGAGTTGCGATGGTAGCAGTGCTTTGAGGATATTTTAG 555 0.5333 MPPPIPQHHHASAVLQFQRKPSPKLLSLLLKAIIMTILTSLFFLFLGFAAFVLLHLCFIGGVLHRLRSPATIQLGTSSNGIAPQDVKKLPHFRVSMGTEPGSETQCVVCLDGFRNGHWCRKLAGCGHVFHRRCVDTWLVKVAACPTCRTPVRLNAGALGSALDIQTEEANQFWSCDGSSALRIF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1039 184 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Glsi01g1039 184 SUPERFAMILY RING/U-box 101 154 - -
Glsi01g1039 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 155 IPR013083 -
Glsi01g1039 184 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 165 - -
Glsi01g1039 184 SMART ring_2 106 147 IPR001841 -
Glsi01g1039 184 Pfam Ring finger domain 105 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1039 Glsi-ChrGlsi01 55679180 55679734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1039 20 177 C3H Transcription Factor Family AT2G18670 40.881 3.31e-32 112