Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1034 ATGGTTGCTGCTAGTTTCAGTTGTGCAAGGAGAACTGTCTTAGATGAGAGGCTAAAATACAATGAGTACTCCATTGCAGCCTTAACTGGAACCTTTCTTCACCAAATTTTCCAGGCTGGGCTTATGAAGGATAGTACCACAATAAACTTCTTGGAGGAATATGCACGAGTGGTACTTCAGAGAAACATTGAAAGCTTGTATGCATGTAGAGTAAACCAGAATGATGTTCACAAAACCTTGATTGATGCTATCCCAAGAATATTGAAGTGGATCAAACTGTTCAAGAATTCGAAGGAAAGAAAGGACCCTAATGTTGATTTTGGATTTAATGATGGGCTAAAGAAAGTTGACATATCTGAGGTAATTGATATCGAGGAGATGGCATGGGCTCCTAGATTTGGGTTGAAAGGGATGATTGATGCTTCTCTCATAGTGACAGTTCAACCAAGAATAAATGAATCGAATGAGAAGATCATGCCATTAGAGTTCAAAACTGGGAAAACACCACGTAGCCAGTCATCTGTAGAACACCGTGCCCAAGTAATCTTATATACTCTCTTGATGTCAGAAAGGTACCAGAAGACTATTGATTCTGGTCTTCTATATTATCTCCAGTCAGATCAGACAGAGGGCATTGTGGTTCGAAGATCTGACTTAGTTGGGTTGATCATGCGACGCAATGAGCTTGCAAGTGATATTCTTAAGGCATTAACTATGCAACAACTGCCTCCAATGTTACAGAGTCCTAGCATTTGCAGAGGTTGTCGCCATCTTAATGTGTGTAGCATTTATCATAAGGTACATGGGGGAAGCGCGGAGAGCAGTGGATTGGGAGATGTGTTTGATTCTCATACTAATCACCTGACATCTGCTCATTCTAAGTTCCTCTACCATTGGGATTGTCTGATTGACTTAGAAGCTAAAGAGACTGAGCTTGTAAAGAAAGAGATGTGGCGATCACATACTTCAAAGGGTCAGAAAAGTGGTGGTCTTTCTTCTATTGTTCTTGATGCTTCAAATAGGATACTGTGTCAGAAATCTCTGAATGATAATCGATTCGTTTATCGTTTTGTAAGACAAGATCTGTCTTCTCTCTATGAAGTGTCTGATGGTGATCCTTCAAGTGCTTCAACAAGTAATTTAGATCTCACACTTAGAAGTGGAGACCATGTGATATTGAGCACTGAATCTAGGGGTCAATGGATTGCAAGTGGGGTGATTGCAGATATTAGTCATGCCCATGTTTCTGTTTCCTTTTCAAAGCGCTTGCAGATTCCTGGCAGTAGTTCCACCACACAAGATCTTCTTCAACAGGTTTGGAGAATTGACAAGGATGAAGTTGTGACTTCATTTGCTATTATGAGGTTTAATGTTGTACAACTCTTTCTACAAAACGATCAAAGTACTCATCTACGGAGGATGATTGTTGATCTTGAGGCTCCTAAATTTGATAGTGGATCTATAGTAAGCCAGGATCCAGCAATATCTTATGTGTGGTCAGAGAAGAACTTGAATGATGATCAACGTAGAGCAATTCTCAAGATACTTACAGCAAAGGATTATGCACTTATACTAGGGATGCCTGGAACAGGGAAGACATCAACCTTGGTTCATGCTGTGAAAGCCTTGTTAGTTAGAGGCACATCTATATTGCTGACAGCCTATACAAACTCTGCTGTAGATAATTTACTTATCAAATTAAAAGCTCAGGGCATTGATTTCATACGTATTGGAAGACATGAAGCTGTGCATGAGGAGGTTAGAGGAAACTGCCTTTCAGCAACCAATGTACAAAATTTTGAAAAGATCAAAATCAGGTTAGAACAAGTCAAAGTTGTTGCAGTTACATGTCTGGGCATAACCAGTCCCTTGCTTGCCAACATGAGATTTGATGTATGCATTATGGATGAAGCTGGGCAGACAACTCTACCAGTTTCTTTGGGGCCTCTTACATTTTCTTCGATGTTTGTACTTGTTGGGGATCATTATCAACTACCTCCACTTGTCCAGAGTATGGAGGCTCGGGAGAATGGCATGGGGATAAGTTTGTTTTGTAGGCTCTCAGAAGCACATCCACAGGCAATTTCAGCACTGCAGAGTCAGTACCGTATGTGTCAGGGCATTATGGACCTGTCAAATGCCTTGATATATGGTGACAGGTTGAGGTGTGGTTCCTCTGAGATAGCTAACGCAAAACTTGAGTTTTCTAGCTTAAAATGTGGCTTGCCTTGGCTAAAAGATGTTTTGGATCCAGGCAAGCCAGTGATATTTATAAATACTGATAAGCTGCCTGCTTTAGAGGTGAGAGAACAAAAGATTGTCAATAACCCAGTTGAAGCCCACATAATTGCTGAGGTTGCAAAGGAATTGATAAAAAATGGAATTGAAGGAGAACAGATTGGCATTATTACCCCATTTAATTCCCAGGCAAACCTCATTAAGCATGCTGCTTGCATGACGTTGTTGGAGATACATACCATTGACAAATACCAGGGTAGAGACAAGGATTGCATATTAGTATCTTTTGTAAGGTCTAGTGAAAATCCATCAAACTGTGCTTCTTCTCTCCTTGGAGACTGGCACAGGGTAAATGTGGCTCTTACGCGTGGCAAGAGAAAGCTGATCATGGTGGGGTCTTGTAGAACTCTATCCAAGGTTCCACTATTAAAGCTTCTCATTAAGATGGTTGAGGAGCAGTCAGGAATTTTGAGTGTGTCTGAGAAGGATATCTTTAAAAAAGGAGAGCTAAAAAGATGTTCCCGGATAAGATGA 2772 0.4069 MVAASFSCARRTVLDERLKYNEYSIAALTGTFLHQIFQAGLMKDSTTINFLEEYARVVLQRNIESLYACRVNQNDVHKTLIDAIPRILKWIKLFKNSKERKDPNVDFGFNDGLKKVDISEVIDIEEMAWAPRFGLKGMIDASLIVTVQPRINESNEKIMPLEFKTGKTPRSQSSVEHRAQVILYTLLMSERYQKTIDSGLLYYLQSDQTEGIVVRRSDLVGLIMRRNELASDILKALTMQQLPPMLQSPSICRGCRHLNVCSIYHKVHGGSAESSGLGDVFDSHTNHLTSAHSKFLYHWDCLIDLEAKETELVKKEMWRSHTSKGQKSGGLSSIVLDASNRILCQKSLNDNRFVYRFVRQDLSSLYEVSDGDPSSASTSNLDLTLRSGDHVILSTESRGQWIASGVIADISHAHVSVSFSKRLQIPGSSSTTQDLLQQVWRIDKDEVVTSFAIMRFNVVQLFLQNDQSTHLRRMIVDLEAPKFDSGSIVSQDPAISYVWSEKNLNDDQRRAILKILTAKDYALILGMPGTGKTSTLVHAVKALLVRGTSILLTAYTNSAVDNLLIKLKAQGIDFIRIGRHEAVHEEVRGNCLSATNVQNFEKIKIRLEQVKVVAVTCLGITSPLLANMRFDVCIMDEAGQTTLPVSLGPLTFSSMFVLVGDHYQLPPLVQSMEARENGMGISLFCRLSEAHPQAISALQSQYRMCQGIMDLSNALIYGDRLRCGSSEIANAKLEFSSLKCGLPWLKDVLDPGKPVIFINTDKLPALEVREQKIVNNPVEAHIIAEVAKELIKNGIEGEQIGIITPFNSQANLIKHAACMTLLEIHTIDKYQGRDKDCILVSFVRSSENPSNCASSLLGDWHRVNVALTRGKRKLIMVGSCRTLSKVPLLKLLIKMVEEQSGILSVSEKDIFKKGELKRCSRIR 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1034 923 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 600 701 - -
Glsi01g1034 923 CDD DNA2_N-like 2 233 - -
Glsi01g1034 923 FunFam DNA replication helicase 702 915 - -
Glsi01g1034 923 Gene3D - 2 262 IPR011604 -
Glsi01g1034 923 Pfam DNA replication factor Dna2 2 143 IPR014808 -
Glsi01g1034 923 Pfam AAA domain 681 880 IPR041679 -
Glsi01g1034 923 CDD SF1_C_Upf1 704 897 IPR047187 -
Glsi01g1034 923 Gene3D - 702 910 IPR027417 -
Glsi01g1034 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 888 IPR027417 -
Glsi01g1034 923 CDD DEXXQc_DNA2 503 703 IPR026851 GO:0017116
Glsi01g1034 923 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 446 595 - -
Glsi01g1034 923 Pfam AAA domain 503 595 IPR041677 GO:0004386
Glsi01g1034 923 Pfam AAA domain 605 671 IPR041677 GO:0004386
Glsi01g1034 923 PANTHER DNA2/NAM7 HELICASE FAMILY 5 899 IPR045055 -
Glsi01g1034 923 FunFam DNA replication helicase Dna2 108 262 - -
Glsi01g1034 923 Pfam Domain of unknown function DUF83 151 262 IPR022765 -
Glsi01g1034 923 Gene3D - 429 701 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1034 Glsi-ChrGlsi01 54567491 54632282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1034 2 645 Core DNA Replication Machinery Family AT1G08840 64.055 0.0 841