Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1026 ATGACAGATTTTCAACCGCTACAACAGAAGCCTGAACCTACTGATGCCCACGCTGAGTTTGAGCGTGGACTGGAGGAATTTATGCGGGGGCACTTGGATGATTGCATGTCATTTGCTTCGTGTAGCTCCGTCCGCACTCCAGATGAAGAGGATGATGAGGGTGAACAGCTAGTTAGGAGGAGAAGAAGGTCTGATCTTGAAGGGGATGATTTAGGTGAGTCATCAGCTGCAAGCCGGTGCCACTCGCGGATTTTGAGCAGATGGGCTGCTCACCAGGCACAAGAGATGATAACTACGATTGAGAGGAGGAATAGGGAGTCTGAGTTAATGGCACTTGCAGGACTACACACAGTCTCAATGTTGGATTCATCTTTCTTGAGGGGATCACAGCCTCCAACTTCTGGCCAGGAGGGGTCTGTAGAGAGGCCCAGCACTCAGGCATCTGCCATTCTGCAGATGTGGCGTGAATTGGAGGATGAACACCTACTGAATCGGGCACGTGAAAGGATGAGAGAAAGGTTACAGCAACAAACGGGTACTGAGTCTAATACCAATGTGTCAAGTACCATGTCAGATAGTCGAGGCAGTGAGAATCAGGGGAGTTTGGGGGATGCAAGTGAAAGTGATAATGATTATGGGACTTGGTCACATGATCAGATTCAATCACAGCATGAAAATGGGGATCATAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGTGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGAGGATGGATGGAAAGTGGCATTAGTGATCATTCATCTAATGCAAGTCAGAGAAACAATAATCGCAGAGCAGAATGGCTTGGTGAAACAGAGCGTGAAAGGGTTAGAATTGTCAGGGAGTGGGTGCAAATGACAAGTCAGCAGAGAGGTTCACGTGGAAATCGGAGGGATAGTCAAGTCACTGAAAGTTCTGTTCAAGTTGATCGAGTACATGATGGATTGGTAGCTGATCATGATGAAGGCCAGCCAGATCATGTTCGTCGGGACATGTTAAGGTTGCGTGGAAGACAAGCTCTGGTTGATTTGCTTGTGAGGATAGAAAGGGAAAGACAAAGAGAACTGCAGGGTTTGTTGGAGCACCGTGCTGTTTCTGATTTTGCTCATCGCAACCGCATTCAGTCATTACTCAGAGGTAGATTCCTTCGAAATGAAAGAACTATAGAAGATGAGAGGCCTCCTTCTATAGCTGCAAATGAATTACTCCAGTTAAGACAACGACACACAGTCTCTGGTTTAAGAGAAGGGTTTCGCTCAAGATTAGAAAATATTGTTCGTGGTCAAGCAAGCAGCAATTCTGATGCCACATCCAATAGTAACATCAGTGAAACTAGAAGTGATCTGAACCAAGCAAACAATTTAATAGGTGCCCAACATGAAAATTATGAACAAGGGCAGATTAGGAGCCTGGAAACTGGTGTGCAGCAGTTGGCTGATCAAACAGGAACTTTTGAAAGTAGCACTAGTGAGAGTATAAGTTGGCAAGAAAGTAGTAATCAAGGGGGCAACTGGCAGGAACAAATTGCTGAAGATGGTCATGGAAATTGGCAACAGAGAGCTTATGGTCCATTCAATCAGTTGAGAGATGGAAGAGCAGTTGGTGATTGGCCACAGGATACTCCTAGAAATGTAGAAGGAGAAGATACTCATCCACGAGAAGGTGAGAGAATTTGGCGCTTGGATAATTCAAGGGAAACTGTTGGTAATTGGTCTGAAGAACCTTCTGGTCCTCCAAGGAATCGCCGTGGTGTTCCTTTTAGAAGACTCAATAGATTTCATCCACCTGATGATGATAATGTGTATAGCATGGAGCTTAGAGAACTTTTGAGCAGGAGGAGTGTTTCTAATCTTCTTCGCAGTGGGTTCCGCGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTGCACAGAAACTTGCCAACTCCTGCCTCACCTGATCGGGACCCTGAACAACGGGGGGATGAACGCAATGGGGTTCAACATGATGCCATTAATAGGCCTTCACTAGTGTTGCCATCTCCACCGGTACCTCCACCGCAACCACTTTGGCACCAGGACTTGCATCAGACTGGATGGTCTCGCCATAGCATTCATCGTTCTGAAATTGAATGGGAGATAATCAATGATTTGAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCTTGCATGGATATGCAGCTGGAGTTACAGCGCTCTGTCAGACAGGAAGTCTCTGCAGCACTGAATCGGTCAGCTGGTGAAAATGGATTGGGTGCTGAGACATCAGAGGATGGTTCTAAATGGGGCCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAGCCATATTGATTCACTCTTGTACAGATGTGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTAGTTCGTGGTGGAGGAAAGTGCCCTTTATGCCGAGCACCTATTGTGGAGGTGATCCGAGCATATTCCATTATGTAG 2559 0.4615 MTDFQPLQQKPEPTDAHAEFERGLEEFMRGHLDDCMSFASCSSVRTPDEEDDEGEQLVRRRRRSDLEGDDLGESSAASRCHSRILSRWAAHQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQPPTSGQEGSVERPSTQASAILQMWRELEDEHLLNRARERMRERLQQQTGTESNTNVSSTMSDSRGSENQGSLGDASESDNDYGTWSHDQIQSQHENGDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNASQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGNRRDSQVTESSVQVDRVHDGLVADHDEGQPDHVRRDMLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTIEDERPPSIAANELLQLRQRHTVSGLREGFRSRLENIVRGQASSNSDATSNSNISETRSDLNQANNLIGAQHENYEQGQIRSLETGVQQLADQTGTFESSTSESISWQESSNQGGNWQEQIAEDGHGNWQQRAYGPFNQLRDGRAVGDWPQDTPRNVEGEDTHPREGERIWRLDNSRETVGNWSEEPSGPPRNRRGVPFRRLNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPASPDRDPEQRGDERNGVQHDAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSIHRSEIEWEIINDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSEDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIM 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1026 852 Coils Coil 729 749 - -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 552 573 - -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 1 22 - -
Glsi01g1026 852 CDD mRING-HC-C3HC5_NEU1 797 849 - -
Glsi01g1026 852 Pfam Zinc finger, C3HC4 type (RING finger) 797 844 - -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 40 77 - -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 176 221 - -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 491 517 - -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 172 244 - -
Glsi01g1026 852 ProSiteProfiles Zinc finger RING-type profile. 800 839 IPR001841 -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 256 277 - -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 544 601 - -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 52 76 - -
Glsi01g1026 852 SUPERFAMILY RING/U-box 799 845 - -
Glsi01g1026 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 787 850 IPR013083 -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 435 455 - -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 663 680 - -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 297 318 - -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 297 335 - -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 124 146 - -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 259 275 - -
Glsi01g1026 852 MobiDBLite consensus disorder prediction 655 680 - -
Glsi01g1026 852 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1026 Glsi-ChrGlsi01 54273690 54279109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1026 800 846 C3H Transcription Factor Family AT3G06140 42.553 1.03e-06 50.1