Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1012 ATGTCATCTCGCATAGTAGCAGAAAATACATTACCGGTTCCAGATGCGACCTCGTATTTTGATTCCATCGAGCTTAACCATCTCCCAAGCCTTCCCACCGAGTCGCCCACGCTCGGACAACTCCTCAAACATGTCGGAGATGTAAGGAAAGAAGCCACTGGTGATGGCGGCGACACGCCGGTGCACCACGCGCTTGACCTTGGAGGTGATGGTCTAGAGCCTCGGTCACTACCTTTCGTCCTTTCCTTTAATAGTCTCACTTACAGAGTCAAGGTCAGCCGGAAATTGAGCTTCTCAGCTCTCTTTCCGCGGCGGAGAAACCGTCTCGGAGATGCGACTGTTGATGTACCGGTGGTCGGGGAGAGTTTGTTCACGAGAACTAAGACCCTATTGAATGATATCTCCGGGGAAGCTCGCGACGGTGAGATCCTCGCGGTCATGGGCGCTAGCGGTTCAGGCAAATCCACCCTTATTGATGCCTTGGCCAATCGAATTGCAAAGGGAAGCTTGAAAGGAAGCGTGACTCTGAACGGCGAGGCCTTGAATTCTCGGCTTCTGAAAGTGATTTCGGCGTACGTAATGCAGGATGATCTGTTATTCCCGATGCTCACAGTGGAAGAGACTCTCATGTTCGCAGCAGAGTTCCGATTGCCTCGCACCCTCTCGAAATCTAAGAAGAAGATGCGAGTCCAAGCATTGATCGACCAGCTCGGCCTGCGAAATGCCGCTAAAACCGTCATCGGAGACGAAGGCCACCGTGGAGTCTCTGGCGGCGAACGAAGGCGTGTTTCCATTGGCATTGACATAATTCATGATCCCATCATCTTGTTCCTAGACGAACCCACCTCGGGACTCGACTCTACCAGTGCATTCATGGTGGTGAAGGTGTTGCAAAGAATCGCACAGAGCGGAAGCATAGTGATCATGTCCATACACCAGCCAAGTTACCGAATCCTCGGACTTCTAGACCGAATGATCTTCTTGTCGGGCGGAAAAACAGTTTACAGTGGTTCACCAATGCAGCTTCCGATGTTTTTCGCTGAATTCGGACACCCAATACCAGAAAACGAGAACAGAACCGAGTTCGCTTTGGACCTGATTCGTGAGCTAGAAGGGTCACCTGGGGGAACCAAGAGCTTAGTGGAGTTCAACAAATCATGGCAGAGCATGAAGAATATTGGATGTGGGACCAACGTTGAGGGCGCTGGCCATGGTTTGTCTTTGAAAGAAGCAATCAGTGCTAGCATTTCGAAAGGGAAATTAGTGTCAGGTGCTACAAACACAAACACTAACGCAAGTGCAACAACTTGGATGGTGCCAACATTTGCCAACCCATTTTGGATCGAAATGGCAACGCTTTCGAAACGATCCTTCATAAATTCGCGTCGAATGCCTGAGTTGTTTGGGATGCGATTGAGTACTGTTTTGGTAACTGGGTTCATATTGGCCACAATGTTTTGGCAATTAGATAACTCTCCCAAGGGGGTTCAAGAAAGGCTTGGCTTCTTCGCATTCGCCATGTCCACCACTTTCTACACTACCGCAGATGCACTTCCTGTTTTCCTCCAAGAACGATACATTTTCATGAGAGAAACTGCACATAATGCTTATCGAAGATCGTCCTATCTTGTCTCTCACGCTCTTGTAGCATTGCCTCCCTTGATCTTCCTCTCGCTGGCTTTTGCTGCTGCCACGTTTTGGGCGGTGGGGCTAGACGGGGGATTTTCTGGGTTCTTGTTCTACGTCCTCGTCATGCTCGCTTCATTCTGGGCAGGTAACTCTTTCGTCAGCTTCCTTTCTGCCTTGGTGCCTCATGTGATGTTGGGTTACACAATTGTGGTAGCCATTTTAGCATATTTCTTGCTGTTCAGTGGATTCTTCATCAACCGAGATAGGATCCCATCTTACTGGATATGGTTCCACTATGTCTCTCTGGTAAAATATCCGTATGAAGCTGTTCTGCAGAATGAATTTGATGACCCATTGAAATGCTTTGTGAGGGGAGTGCAGATTTTCGATAACACACCTCTTGGATCATTGCCAACCTCCATGAAGGTGAAGCTGTTGAGGAGCATGAGCAACACGTTGGGGATGAATATCACCAGCACAACGTGCTTGACGACAGGTACTGATATATTGCAGCAGAACGGGGTATTGGATTTGAGCAAGTGGAACTGTTTGTGGCTAACTGTGGCTTGGGGTTTCCTGTTTAGGATTCTGTTTTACTTCTGCTTGTTGTGGGGTAGCAGGAACAAAAGAAGGTGA 2265 0.4879 MSSRIVAENTLPVPDATSYFDSIELNHLPSLPTESPTLGQLLKHVGDVRKEATGDGGDTPVHHALDLGGDGLEPRSLPFVLSFNSLTYRVKVSRKLSFSALFPRRRNRLGDATVDVPVVGESLFTRTKTLLNDISGEARDGEILAVMGASGSGKSTLIDALANRIAKGSLKGSVTLNGEALNSRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKMRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSGGKTVYSGSPMQLPMFFAEFGHPIPENENRTEFALDLIRELEGSPGGTKSLVEFNKSWQSMKNIGCGTNVEGAGHGLSLKEAISASISKGKLVSGATNTNTNASATTWMVPTFANPFWIEMATLSKRSFINSRRMPELFGMRLSTVLVTGFILATMFWQLDNSPKGVQERLGFFAFAMSTTFYTTADALPVFLQERYIFMRETAHNAYRRSSYLVSHALVALPPLIFLSLAFAAATFWAVGLDGGFSGFLFYVLVMLASFWAGNSFVSFLSALVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPSYWIWFHYVSLVKYPYEAVLQNEFDDPLKCFVRGVQIFDNTPLGSLPTSMKVKLLRSMSNTLGMNITSTTCLTTGTDILQQNGVLDLSKWNCLWLTVAWGFLFRILFYFCLLWGSRNKRR 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1012 754 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 114 355 IPR003439 GO:0005524
Glsi01g1012 754 Pfam ABC transporter 131 283 IPR003439 GO:0005524
Glsi01g1012 754 SMART AAA_5 140 332 IPR003593 GO:0016887
Glsi01g1012 754 Gene3D - 120 345 IPR027417 -
Glsi01g1012 754 ProSitePatterns ABC transporters family signature. 255 269 IPR017871 GO:0005524|GO:0016887
Glsi01g1012 754 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 63 740 - -
Glsi01g1012 754 FunFam ABC transporter G family member 6 120 346 - -
Glsi01g1012 754 Pfam ABC-2 type transporter 312 370 IPR043926 GO:0140359
Glsi01g1012 754 Pfam ABC-2 type transporter 452 658 IPR013525 GO:0016020|GO:0140359
Glsi01g1012 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 342 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1012 Glsi-ChrGlsi01 49823854 49826118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1012 130 315 Calmodulin-binding Proteins AT2G36910 31.217 5.91e-12 67.8