Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1006 ATGGAAAAATATGTATCCAGCTTCAGTCTCAGCACCTCTAATATCTCCGAAGCGTCGCAGCCTATTCAGCCTTCAAAATCAACAAGCTTCAATGCTAACATCGTCTCTGATATCCATATCACTGACTACTTGCTACATGAAGAAGAGCCCATCAATAATAATGTATCCTTTCATAGTGCCAACTATGCTCACCCTGGACTCCCTGGAACCAAATTTATTAAACCTCCGAAATCGTCTAACTTGAGCAACCGAAAGCCATCTATAAACATCACAATCCCTCCCACGAGCTTAATTCTTAGTTCACAACCTATGGCTACAACCAGTGACAATAGGAGGTCATCGGCTATCAAAGAGGACAAGCACTATCGAGGCGTCAGAAGGCGACCCTGGGGAAAGTTTGCAGCTGAGATTCGGGATCCAAATCGAAAAGGGTCAAGGGTATGGCTTGGAACCTTTGATACAGCCATTGAAGCTGCAAAAGCTTATGATAGAGCAGCTTTCAAAATGAGAGGATGCAAAGCTATACTAAATTTCCCTCTTGAGGTTGGGGATTCTGCAGATTCAGAATCCACAGTGAAGGTTGGGGAGAAAAGGAGGAAAGAGGGACAGAGTGAAGAGAGAGAGATTGTGGAGAGGAAGGAGTTGAAGAAAGAAGAGTTCTCACCCAAAGGGGTTTCTGCAACGGTTGGTCCGTTGACGCCGTCGTGCTGGATGGGGTTTTGGGACACTGATGTTAATAATACTATTTTCACTGTTCCTCCGTTATCACCATTATCTCCGCTGATGGTTGTGTGA 795 0.4478 MEKYVSSFSLSTSNISEASQPIQPSKSTSFNANIVSDIHITDYLLHEEEPINNNVSFHSANYAHPGLPGTKFIKPPKSSNLSNRKPSINITIPPTSLILSSQPMATTSDNRRSSAIKEDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDRAAFKMRGCKAILNFPLEVGDSADSESTVKVGEKRRKEGQSEEREIVERKELKKEEFSPKGVSATVGPLTPSCWMGFWDTDVNNTIFTVPPLSPLSPLMVV 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1006 264 CDD AP2 120 179 IPR001471 GO:0003700|GO:0006355
Glsi01g1006 264 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Glsi01g1006 264 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Glsi01g1006 264 Pfam AP2 domain 121 171 IPR001471 GO:0003700|GO:0006355
Glsi01g1006 264 PANTHER DNA-BINDING DOMAIN 85 205 IPR044808 GO:0003700|GO:0009873
Glsi01g1006 264 FunFam Ethylene-responsive transcription factor 2 120 181 - -
Glsi01g1006 264 SUPERFAMILY DNA-binding domain 121 181 IPR016177 GO:0003677
Glsi01g1006 264 Gene3D AP2/ERF domain 120 181 IPR036955 GO:0003700|GO:0006355
Glsi01g1006 264 ProSiteProfiles AP2/ERF domain profile. 121 179 IPR001471 GO:0003700|GO:0006355
Glsi01g1006 264 MobiDBLite consensus disorder prediction 187 208 - -
Glsi01g1006 264 MobiDBLite consensus disorder prediction 190 208 - -
Glsi01g1006 264 SMART rav1_2 121 185 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1006 Glsi-ChrGlsi01 47431565 47432359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1006 78 261 AP2-EREBP Transcription Factor Family AT5G51190 51.053 4.65e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi01g1006 AP2 3.3e-16 CL0081