Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1001 ATGTTGGCAATGGAGAAGGATTTTGATTCCAAGTTGAGTATCCAGGTTAATTCATCTAATGATGGGAATGCCCAGAGATCCAAGAGTTTTGCTTTTCGAGCTCCTCAGGAGAATTACAGCATCCAGGACTTCGAATTGGGCAAGATCTATGGTGTTGGTTCTTATTCAAAGGTTGTGAGGGCAAAGAAGAAGGACACGGGTACTGTGTATGCATTAAAGATCATGGACAAAAAATTTATCACGAAGGAGAACAAAACAGCTTATGTGAAGTTGGAACGCATAGTGCTTGATCAATTGGACCATCCTGGCCTTGTGCGGCTGTATTTCACATTTCAAGACACATTTTCTCTGTACATGGCACTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAACCAGGAAAGGTCGTCTATCAGAGGATGAAGCACGTTTCTATGCAGCTGAAGTTGTGGATGCTCTTGAATACATACATAATTTGGGCTTGATACATCGTGATATTAAGCCCGAGAACTTGTTGCTTACAGCTGAAGGACATATCAAAATAGCCGATTTTGGGAGTGCGAAGACTATGCAGGATAGCCAAATCACAGTCCTTCTAAATGCATCATCAGATGATAAAACTTGCACATTTGTGGGGACTGCTGCATATGTCCCTCCAGAGGTTCTTAATTCTTCTCCAGCAACTTTTGGAAATGACCTCTGGGCACTTGGATGCACATTATACCAAATGCTCTCTGGAACTTCTCCTTTTAAAGATGCAAGTGAATGGCTTATTTTCCAAAGAATTATTGCCAGAGATATTCAATTTCTAGATTACTTTTCTGATCAAGCAAGAGATCTTATTGACCGGTTATTGGATTTGGATCCCAGCAGGAGACCAGGTGCAGGACCTGATGGTTATGCTGTTTTGAAAAGGCATCCCTTTTTCAAGGGAGTTGACTGGAGTAACTTAAGGGCTCAAACCCCCCCAAAACTTGCTCTGGAACAAGGGGTTGATTCACCTGAGACTCATGATGTTCATGATTCATCATGGAATCCTTCTCACATTGGTGATGGTTTGGCTAGGGAAGCTGATGGAAATACTGGTGCTACATCATCTTCTGAAGGGACTGGTCACATAACTAGGCTAGCCTCAATTGATTCTTTTGATTCAAAATGGCAACAATTTTTGGATCCTGGGGAATCTGTTCTTATGATCTCAATGGTTAAAAATATACAGAAACTGACAAGCAAGAAGGTGCAGCTTATCCTTACCAACAAGCCGAAGTTGATTTTTGTGGACCCTTCAAAGCTTATTGTGAAGGGAAATATAAGATGGTCTGATAATCCAAATGATCTAAGCATCCAAGTGACAAGTCCTTCACATTTCAAAATTTGCACACCAAAAAAGGTAATGTCATTTGAGGATGCAAAGCAAAGGGGGTGTCAGTGGAAGAAAGCAATTGAAGGGCTACAAAACCGGTGA 1470 0.4122 MLAMEKDFDSKLSIQVNSSNDGNAQRSKSFAFRAPQENYSIQDFELGKIYGVGSYSKVVRAKKKDTGTVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGLVRLYFTFQDTFSLYMALESCEGGELFDQITRKGRLSEDEARFYAAEVVDALEYIHNLGLIHRDIKPENLLLTAEGHIKIADFGSAKTMQDSQITVLLNASSDDKTCTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIARDIQFLDYFSDQARDLIDRLLDLDPSRRPGAGPDGYAVLKRHPFFKGVDWSNLRAQTPPKLALEQGVDSPETHDVHDSSWNPSHIGDGLAREADGNTGATSSSEGTGHITRLASIDSFDSKWQQFLDPGESVLMISMVKNIQKLTSKKVQLILTNKPKLIFVDPSKLIVKGNIRWSDNPNDLSIQVTSPSHFKICTPKKVMSFEDAKQRGCQWKKAIEGLQNR 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1001 489 Pfam Protein kinase domain 46 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1001 489 Pfam PH domain 386 488 IPR033931 -
Glsi01g1001 489 FunFam 3-phosphoinositide-dependent protein kinase 2-like 128 326 - -
Glsi01g1001 489 ProSiteProfiles Protein kinase domain profile. 44 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1001 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Glsi01g1001 489 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Glsi01g1001 489 SUPERFAMILY PH domain-like 305 488 - -
Glsi01g1001 489 FunFam 3-phosphoinositide-dependent protein kinase 2-like 42 127 - -
Glsi01g1001 489 CDD STKc_PDK1 42 311 IPR039046 GO:0004674
Glsi01g1001 489 FunFam 3-phosphoinositide-dependent protein kinase 1 359 489 - -
Glsi01g1001 489 Gene3D - 356 489 IPR011993 -
Glsi01g1001 489 MobiDBLite consensus disorder prediction 335 372 - -
Glsi01g1001 489 SMART serkin_6 44 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1001 489 SUPERFAMILY Protein kinase-like (PK-like) 41 347 IPR011009 -
Glsi01g1001 489 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 327 - -
Glsi01g1001 489 Gene3D Transferase(Phosphotransferase) domain 1 128 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1001 Glsi-ChrGlsi01 46198810 46273236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1001 1 489 AGC Kinase Gene Family AT3G10540 80.612 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Glsi01g1001 Pkinase 1.1e-65 CL0016