Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0982 ATGGGTACTACCAAGTGCTGTAGTGCCGGAACAAGAGTTTCCTCGTCGTGTAATGCTCTGCCACTTGTCGCCCTATTATTGGGTGTTGTGTTACGTATCCTCCTCTCTCTCTCTGTCTCTCTCTGTGTACCACAGAGAGCTACAGAGAGTCTAACTTTTAAGAGTTGCGGTAGACTCGGATCCTGTCTCCCTTGGAAAAAAAAGGTTTCTCAAAATCTTGACCTCTTCCTTCTTTCCTTCTCTCACTCTACCCTTTCGTTCTTTACTCTAAGCTCTATCACTCTCTTGGCTTTCCTCTCTTTGCTAGTGAAGATGGGTGACCAGTTTGGGCTGCCCGATCTCCGGCAGCTCATAGCAGGAAGAACCCATTTACGCAACAGCACCAACCCTCATCTTCCTGAGCTACCCTCTCTGCATCACAGTTTGTGTGCTGCTCCTGCTTCTGCTCCACACAATAGCTACGACCCCATCATGGTTGGTGACGTTTTCTCTCGTGGGTTCGCTCACTTTGCTCATGATTATTCCTCCAGTGTCAATCCCACTACAAACCCTACTGTTACTGCCACTTCTTCAGATCATGCTACTGCATTCTGTAGCATAGAGGCTGCAGAAAAGGGGTGGCTAGGATTTGATGCTGGAAACAACAGGTGGCCTAGACAAGAGACTCTTTCCCTCCTAGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGACTAATCAGAAAGGGCCATTGTGGAATGAAATTTCTAGGATCATGGGGGAGGAATATGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAATTTGAGAATTTGTACAAGTACTACAAGAAGACCAAGGAAGGAAAAGCGGGTAGACAAGACGGGAAACACTACAGATTCTTTCGCCAGCTTGAAGCAATATGTGGAGAAACAAGCACTCATGCCTCAACTTCAGAAACCCATCATGCTATAAATACTTCCCCTTATCAAACTCCAAGCATCACAATCAACCAAGATGGTGAAGTTCTTCATAGCCTCACGTGCTCAAAGAGCCTTAGCCTCTCAAATTCATCTGAACTCGAGACATCCTCGTCCGAAAACAACGATGAGGATCTTTCAGCCATTGCGTATATGATGAAGCAGTCCTGCAGGGAGAAGCAGAAAGGGATAGATCAGAGACAAAGTCGATATGGAAGGGTCAGGAAAAGCTGGAGAGCTAAAGTTGAGGAGCTTGTGGACTCCCACATGAAGCAGATCACAGAGACTCAAGATGCTTGGATGCAGAAGATGATTAGTGTTGTTGAGCAAAGAGAGCAAGAAGTGGCGTCTAAGGAGGAAGAAAGGAAGAAGAAAGATTCGACGAGGTTTGATCAAGAAGTACATGAACTCTGGGCTAAAGAGAGAGCGTGGGTTGAAGCAAGAGACGCTGCATTGATGGAGGTTGTGAAGAAACACATGTGGAAAGAGCTTGAAGCACTGCCATTAACTGAACCCATGGTTGAAGAACTACAAAACAGGAACAAGAGCCAGACAAATGATGCCCTGGATTATCCATGTGAAGCTGCTGACCATAGCAGTGGGTGGACAGAACTGGAGATTTCAAATCTTATACAACTGAGGACTGGATTTGACGCGCGATTCCAAGAAAGTGGGTACTTGGAGAATGGTCTTTGGGATGAAATAGCAGCAAAAATGGTTTGTTTGGGCTCTGATAGGAGTGCGAGTGAGTGCAGGCAAATATGGGGTGAGATCAGCTTCTCTCTCAGCAAGACAATGGAGTGTAGTAGTACTATTAAAACGAGGCCTTTGTGTGTGGGACTGCAGATGACGGAGGATGACATTTCACATTCAAGTTCTAACGCAGGCAGCAGAGGTTATCTGACAACTGCTTCAGAGTTCTAG 1887 0.4589 MGTTKCCSAGTRVSSSCNALPLVALLLGVVLRILLSLSVSLCVPQRATESLTFKSCGRLGSCLPWKKKVSQNLDLFLLSFSHSTLSFFTLSSITLLAFLSLLVKMGDQFGLPDLRQLIAGRTHLRNSTNPHLPELPSLHHSLCAAPASAPHNSYDPIMVGDVFSRGFAHFAHDYSSSVNPTTNPTVTATSSDHATAFCSIEAAEKGWLGFDAGNNRWPRQETLSLLEIRSRLDSKFRETNQKGPLWNEISRIMGEEYGYQRSGKKCKEKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEAICGETSTHASTSETHHAINTSPYQTPSITINQDGEVLHSLTCSKSLSLSNSSELETSSSENNDEDLSAIAYMMKQSCREKQKGIDQRQSRYGRVRKSWRAKVEELVDSHMKQITETQDAWMQKMISVVEQREQEVASKEEERKKKDSTRFDQEVHELWAKERAWVEARDAALMEVVKKHMWKELEALPLTEPMVEELQNRNKSQTNDALDYPCEAADHSSGWTELEISNLIQLRTGFDARFQESGYLENGLWDEIAAKMVCLGSDRSASECRQIWGEISFSLSKTMECSSTIKTRPLCVGLQMTEDDISHSSSNAGSRGYLTTASEF 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0982 628 ProSiteProfiles Myb-like domain profile. 215 274 IPR001005 -
Glsi01g0982 628 Coils Coil 422 449 - -
Glsi01g0982 628 PANTHER FI21293P1 180 597 - -
Glsi01g0982 628 CDD GT1 215 281 - -
Glsi01g0982 628 Gene3D - 523 582 - -
Glsi01g0982 628 Gene3D - 217 279 - -
Glsi01g0982 628 ProSiteProfiles Myb-like domain profile. 523 580 IPR001005 -
Glsi01g0982 628 CDD GT1 523 576 - -
Glsi01g0982 628 SMART sant 519 582 IPR001005 -
Glsi01g0982 628 SMART sant 213 276 IPR001005 -
Glsi01g0982 628 FunFam trihelix transcription factor PTL-like 217 279 - -
Glsi01g0982 628 Pfam Myb/SANT-like DNA-binding domain 215 302 IPR044822 -
Glsi01g0982 628 Pfam Myb/SANT-like DNA-binding domain 522 579 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0982 Glsi-ChrGlsi01 39620745 39624241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0982 108 585 Trihelix Transcription Factor Family AT5G03680 39.096 4.66e-93 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Glsi01g0982 Myb_DNA-bind_4 6.8e-19 CL0123