Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0946 ATGGATGCTCCAGAGGAACTCTCTTTGGGGTCCAAAGAGCAAACCCACATTATCAAAGGGAAGAGAACAAAAAGGTTAAGGCCACAATCCCCGATCCCCTTCTCAATCACAGGAAATTCTTCAAATGGAGAAGGAGATAAAGGAGATTGCGACAACATTAATGTTGACAAAAATGATGACGACGATGATGCCAATAACACCACCACGTCTCCCACCACTTCCTCTGCTGAATTACAAGACTGCACAGAGGAAGAGGAGGATATGGCCAATTGCCTAATCCTTCTAGCTCAAGGCCAATCCAGGGAGTCCCCGAAGCTCGCCGAGGAGGATGGTGGGGTGAATTACAGCAAGTATAGCAGCAGAAAATTCATGGAAGCTGCTACAATGGGGTACGAATGCAAGACTTGTAACAGAACCTTTCCTTCATTCCAAGCACTGGGAGGCCACAGAGCAAGTCACAAGAAGCCTAAGGCTTTGGCTTCAATGGCGTTTGAATCTCAAGAGAAGAAGCAGCAGCTGTTATTGTCATCAGATGAGGAAGAGTTTCAATTCAAGAACAAAGACCCACTTTCTCTTCAATTGAATAGCAGAGGGAATTTGTATAGCAGCAATAATAAGAAGTCCAAGGTCCATGAGTGCTCTGTTTGTGGTGCGGAATTCGCATCAGGTCAAGCTTTGGGTGGCCATATGAGACGGCATCGAGCACCCATAGGAACCAATACCACATTGTCTTTGACCCCATTGACTTTAGAAACAGATGAGGATCAACCCAGAAAGCGAAGGAAATTACTGTCTCTGGATTTAGATCTCAACCTTCCTGCCCCAGAAGATGATCAGAGAGAACCCAAGCTTGCCTTTGCCCCCAAGCAACGACAAAATCAGCGGCAGCAGCAACAAGCAAGTCTTGTCTTCCCCTCTCCCACTTTAGTGGATTGCCATTACTGA 945 0.4635 MDAPEELSLGSKEQTHIIKGKRTKRLRPQSPIPFSITGNSSNGEGDKGDCDNINVDKNDDDDDANNTTTSPTTSSAELQDCTEEEEDMANCLILLAQGQSRESPKLAEEDGGVNYSKYSSRKFMEAATMGYECKTCNRTFPSFQALGGHRASHKKPKALASMAFESQEKKQQLLLSSDEEEFQFKNKDPLSLQLNSRGNLYSSNNKKSKVHECSVCGAEFASGQALGGHMRRHRAPIGTNTTLSLTPLTLETDEDQPRKRRKLLSLDLDLNLPAPEDDQREPKLAFAPKQRQNQRQQQQASLVFPSPTLVDCHY 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0946 314 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Glsi01g0946 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
Glsi01g0946 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 211 233 IPR013087 -
Glsi01g0946 314 PANTHER ZINC FINGER PROTEIN ZAT5 70 292 - -
Glsi01g0946 314 MobiDBLite consensus disorder prediction 30 47 - -
Glsi01g0946 314 SMART c2h2final6 211 233 IPR013087 -
Glsi01g0946 314 SMART c2h2final6 131 153 IPR013087 -
Glsi01g0946 314 MobiDBLite consensus disorder prediction 1 85 - -
Glsi01g0946 314 MobiDBLite consensus disorder prediction 49 64 - -
Glsi01g0946 314 Pfam C2H2-type zinc finger 210 236 - -
Glsi01g0946 314 Pfam C2H2-type zinc finger 131 156 - -
Glsi01g0946 314 MobiDBLite consensus disorder prediction 270 300 - -
Glsi01g0946 314 ProSitePatterns Zinc finger C2H2 type domain signature. 213 233 IPR013087 -
Glsi01g0946 314 SUPERFAMILY beta-beta-alpha zinc fingers 131 233 IPR036236 -
Glsi01g0946 314 Gene3D Classic Zinc Finger 129 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0946 Glsi-ChrGlsi01 32560620 32561564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0946 1 314 C2H2 Transcription Factor Family AT5G04390 40.957 1.02e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi01g0946 zf-C2H2_6 5.3e-13 CL0361