Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0945 ATGGGTGGTGATTCTGTCTCCGGCAAAGCGTTCCGGTTCGAAGCAATAGGGGTTATCGACATCTACAAATCCGAACCTTGGGACCTCCCCTGTCAGTCGAAGCTGAAGAGCAGGGACTTGGAGTGGTACTTCTTCAGTGTGCTGGACAAGAAGTACGGAAATGGCTCGAGGACGAATCGGGCCACTGAGAAAGGGTACTGGAAGACTACGGGAAAAGATCGCCCAGTGCGATACGGCTCCCGAATAGTCGGAATGAAGAAGACCCTCGTTTATCATAGTGGACGGGCACCCCGTGGTACTCGTACCAATTGGGTCATGCATGAATACAGACTGGATGACAAAGAATTGGCAAAAGCTGGAATAGCGCAGGATGCGTATGTGTTCTGTAGGATTTTCCAGAAGAGTGGTACAGGGCCAAAGAATGGGGAGCAGTATGGTGCTCCCTTTGTAGAGGAGGAATGGGAAGATGATGAGGTGGCCGTGGCTCCACTGCCAGGTGATGAGGCTGTGACTGATGAAGTGGTAGCTGGTGGTAATGCTTATGTTGAAACGAACGACCTTGAGCAGTACCTTGATATGGGTGTGGCATCTGGAAGTTCTGGTTATCCATTAAACTTTTATCATGGGGAGTGTAGCTGCTATCCTGAGTATTCCCAGGAGGTTATTGAAGATCAGAAACCCTTGGTAGACACTGTTGGAACTTGTAAGCATCAAAATGACCTGTTCTTGAATATGCTGGAGCAATATGCTGTTGACAGCATGCCAGTAAGAGATGGTATCAATGGTGAAGCAAGCCATAATGGTAATACCCTGAATTACAATTACGCTTTTGATGAGCTATACTTGGATGCTACTGATAATCTTCTCGGTGATGGATCATTCGTGGAAACCAATGATCTTGTAAACCCTGTTGAGCCAAATTCTGCCGGGACAGATGCTGCTGATATTGATATGACAGAAGAGTATCTCACATATTTTGATGCTAATGATGATATTTCCCAGTATATATCTTTTGATTCTCCTCAGAATACGGGGAGTGAAAACCCTGTTTCTGACCAAGGACCACCTGTAACCCTGCAGAATGTGGATGAAGAAACCAAGGATGTTCCTTTGACAAGTAATAATGATTTAGGAGCACATTCTATCAATGAAGCTTCCTCTTCAAAGCAGGATCCAGAGGCGTCAAAATCAGTATTAGGAAATACATCTCCATTTATAAAGCAGGCCAGTCACTTGTTGGGCAGCATCCCTGATCCCGCTGCATTTGCTTCAGAGTTTCCACCTAAGGAGATTGCTCTTCGGCTTCATTCTGCAGATCAATCTTCCAATTCAGCTCATGTAACTGCAGGTATGATCAGAATAACAGGCCTCACTGTAAGAGGCAATGGGATGGACTGGATGCTGGGCAAGAATGGAGAATTCAATGTTGTAATCTCACTGGATGTTAATTCTGCTGCTTTAGTGCATGTTTCTGGTTTGCTCTCTGGCAAGGCTGCTTTTATGTTGTCACACGGCGGGATTTGCCTAATATTTTTTTCAGTTCTGATTCTTTCACTGAGTGTTAAGATTGGAAGTTATATGTATACCGGTAAATGA 1596 0.4505 MGGDSVSGKAFRFEAIGVIDIYKSEPWDLPCQSKLKSRDLEWYFFSVLDKKYGNGSRTNRATEKGYWKTTGKDRPVRYGSRIVGMKKTLVYHSGRAPRGTRTNWVMHEYRLDDKELAKAGIAQDAYVFCRIFQKSGTGPKNGEQYGAPFVEEEWEDDEVAVAPLPGDEAVTDEVVAGGNAYVETNDLEQYLDMGVASGSSGYPLNFYHGECSCYPEYSQEVIEDQKPLVDTVGTCKHQNDLFLNMLEQYAVDSMPVRDGINGEASHNGNTLNYNYAFDELYLDATDNLLGDGSFVETNDLVNPVEPNSAGTDAADIDMTEEYLTYFDANDDISQYISFDSPQNTGSENPVSDQGPPVTLQNVDEETKDVPLTSNNDLGAHSINEASSSKQDPEASKSVLGNTSPFIKQASHLLGSIPDPAAFASEFPPKEIALRLHSADQSSNSAHVTAGMIRITGLTVRGNGMDWMLGKNGEFNVVISLDVNSAALVHVSGLLSGKAAFMLSHGGICLIFFSVLILSLSVKIGSYMYTGK 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0945 531 Pfam No apical meristem (NAM) protein 6 111 IPR003441 GO:0003677|GO:0006355
Glsi01g0945 531 Gene3D NAC domain 3 137 IPR036093 GO:0003677|GO:0006355
Glsi01g0945 531 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 192 - -
Glsi01g0945 531 ProSiteProfiles NAC domain profile. 1 134 IPR003441 GO:0003677|GO:0006355
Glsi01g0945 531 MobiDBLite consensus disorder prediction 336 400 - -
Glsi01g0945 531 SUPERFAMILY NAC domain 8 134 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0945 Glsi-ChrGlsi01 32323609 32326812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0945 6 523 NAC Transcription Factor Family AT5G04410 42.908 8.15e-125 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi01g0945 NAM 8.5e-22 No_clan