Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0941 ATGTGGAGGTCCCGATCGCTTGATGGATCAGTTTCTAATGGAGGAACTGTAAATGAGGATACAACTAGAGAACCTGAATTGCCTGTGCCAGTCCAAAGCAAACCTCCTGAGCAAATAACTATGCCAAAACCAGAAACTAAACCTTCCCAGGAGCCTAAACCCAAGAAACCTGCTTCTATGAAGAGGATGTCTAGTGCAGGACTTCGTGTTGATTCTGTATTACAAACAAAAACTGGTAATTTCAAGGAGTTCTTCAGTCTGGGGAGAAAACTAGGACAGGGTCAGTTTGGGATAACATTTCTATGTGTGGAGAAGGCAACAGGTAAAGAGTATGCCTGTAAATCTTTGGCAAAAAGGAAGCTGGTAACTGATGAGGATGTTGAGGATGTGAGAAGAGAAATTCAGATAATGCACCACTTGGCTGGGCATCCTAATGTTATATCCATTAAAGGTGCTTATGAGGATGCAGTGGCAGTTCATGTTGTGATGGAGTTCTGTGCCGGGGGTGAGCTTTTTGATCGGATTATTCAGCGCGGGCATTATACCGAAAGAAAGGCAGCTGACCTCATTAGGACTATAGTCGGGGTTGTGGAAGCTTGTCATGCTCTGGGTGTGATGCACAGAGATCTTAAACCTGAGAACTTTCTCTTTGTCAATCAGCAGGAGGATTCTCTTCTCAAAACCATTGATTTTGGATTATCTGTATTTTTTAAGCCAGGTGAAATATTTACGGATGTGGTTGGCAGTCCATATTATGTTGCCCCAGAAGTTTTGCGAAAGAGTTATGGTCCAGAAGCAGATGTTTGGAGTGCTGGGGTGATCCTGTACATTCTTTTGAGTGGAGTGCCTCCATTTTGGGCTGAAACCGAGCAAGGAATATTTGAAGAGGTTTTGCATGGTGATCTTGACTTTTCAACTGAACCCTGGCCTAGCATTTCTGAAAGTGCCAAAGATTTAGTAAGAAAAATGCTTGTTCGTGACCCTAGAAGGCGGCTGACTGCACATCAAGTTTTATGTCATCCTTGGATTCAAGTTGATGGTATAGCTCCTGACAAACCACTTGATTCTGCTGTACTAAGCCGCTTGAAGCAATTTTCAGCTATGAACAAGTTCAAAAAAATGGCTCTTAGAGTTATTGTTGAGAGCTTATCTGAAGAAGAAATAGCTGGCTTGAAAGAAATGTTTAAGATGATAGACACAGACAATAGTGGTCAAATCACGTTTGATGAACTTAAGGCTGGTTTGAAAAGAGTGGGTGCTAATCTTAAGGAGTCTGAAATTTATGATTTAATGCAAGCAGCTGATGTTGACAATAGTGGAACCATTGACTATGGGGAGTTCATTGCTGCAACATTGCATCTAAACAAGATTGAGAGAGAAGATCATCTATTTGCAGCCTTTTCTTACTTTGATAAGGATGGAAGTGGCTATATTACTCAAGATGAACTTCAACAAGCCTGTGTGGAGTTTGGCGTAGAAGATGTCCGCTTGGAAGAGATAATCAAGGAAATTGATCAAGATAACGATGGACGCATAGATTATAATGAATTTGTAGCTATGATGCAGAAAGGAAATATTCCTGGGATTGGTAGGAAGGGCTTAGAAAATAGCTTCAGCATCGGTTTCAGGGAGGCAATAAAACCGTAG 1647 0.4153 MWRSRSLDGSVSNGGTVNEDTTREPELPVPVQSKPPEQITMPKPETKPSQEPKPKKPASMKRMSSAGLRVDSVLQTKTGNFKEFFSLGRKLGQGQFGITFLCVEKATGKEYACKSLAKRKLVTDEDVEDVRREIQIMHHLAGHPNVISIKGAYEDAVAVHVVMEFCAGGELFDRIIQRGHYTERKAADLIRTIVGVVEACHALGVMHRDLKPENFLFVNQQEDSLLKTIDFGLSVFFKPGEIFTDVVGSPYYVAPEVLRKSYGPEADVWSAGVILYILLSGVPPFWAETEQGIFEEVLHGDLDFSTEPWPSISESAKDLVRKMLVRDPRRRLTAHQVLCHPWIQVDGIAPDKPLDSAVLSRLKQFSAMNKFKKMALRVIVESLSEEEIAGLKEMFKMIDTDNSGQITFDELKAGLKRVGANLKESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKIEREDHLFAAFSYFDKDGSGYITQDELQQACVEFGVEDVRLEEIIKEIDQDNDGRIDYNEFVAMMQKGNIPGIGRKGLENSFSIGFREAIKP 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0941 548 FunFam Calcium-dependent protein kinase SK5 171 355 - -
Glsi01g0941 548 MobiDBLite consensus disorder prediction 1 20 - -
Glsi01g0941 548 ProSiteProfiles EF-hand calcium-binding domain profile. 458 493 IPR002048 GO:0005509
Glsi01g0941 548 CDD STKc_CAMK 84 342 - -
Glsi01g0941 548 ProSiteProfiles EF-hand calcium-binding domain profile. 422 457 IPR002048 GO:0005509
Glsi01g0941 548 CDD EFh 391 450 IPR002048 GO:0005509
Glsi01g0941 548 SUPERFAMILY EF-hand 383 523 IPR011992 -
Glsi01g0941 548 Pfam EF-hand domain pair 461 522 IPR002048 GO:0005509
Glsi01g0941 548 Pfam EF-hand domain pair 391 451 IPR002048 GO:0005509
Glsi01g0941 548 FunFam Calcium-dependent protein kinase 1 351 525 - -
Glsi01g0941 548 Pfam Protein kinase domain 86 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0941 548 SUPERFAMILY Protein kinase-like (PK-like) 85 344 IPR011009 -
Glsi01g0941 548 Gene3D - 368 528 - -
Glsi01g0941 548 MobiDBLite consensus disorder prediction 1 66 - -
Glsi01g0941 548 FunFam Calcium-dependent protein kinase 1 87 170 - -
Glsi01g0941 548 Gene3D Transferase(Phosphotransferase) domain 1 171 367 - -
Glsi01g0941 548 PANTHER SERINE/THREONINE-PROTEIN KINASE 75 517 - -
Glsi01g0941 548 CDD EFh 462 522 IPR002048 GO:0005509
Glsi01g0941 548 ProSitePatterns EF-hand calcium-binding domain. 471 483 IPR018247 -
Glsi01g0941 548 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Glsi01g0941 548 ProSiteProfiles EF-hand calcium-binding domain profile. 386 421 IPR002048 GO:0005509
Glsi01g0941 548 SMART efh_1 426 454 IPR002048 GO:0005509
Glsi01g0941 548 SMART efh_1 496 524 IPR002048 GO:0005509
Glsi01g0941 548 SMART efh_1 390 418 IPR002048 GO:0005509
Glsi01g0941 548 SMART efh_1 462 490 IPR002048 GO:0005509
Glsi01g0941 548 Gene3D Phosphorylase Kinase; domain 1 87 170 - -
Glsi01g0941 548 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Glsi01g0941 548 SMART serkin_6 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0941 548 ProSiteProfiles Protein kinase domain profile. 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0941 548 ProSitePatterns EF-hand calcium-binding domain. 435 447 IPR018247 -
Glsi01g0941 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Glsi01g0941 548 ProSiteProfiles EF-hand calcium-binding domain profile. 496 527 IPR002048 GO:0005509
Glsi01g0941 548 ProSitePatterns EF-hand calcium-binding domain. 399 411 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0941 Glsi-ChrGlsi01 31352588 31380935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0941 1 543 EF-hand Containing Proteins AT5G04870 77.929 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi01g0941 Pkinase 2e-73 CL0016