Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0897 ATGGGGGGTAAGGACGATGCTCGAGCTCCGTGCGAGCTTTCCGGCTCCCGAAAAATGTTCTGGCGGTCGGCTTCTTGGTCGGCTTCCCGTACCGCCGCCCGCAACCCGGACGGCGAGCAAAAGGATTTTGCAGATCCAGATGGAAGTATTGGTAATATCAACGAGCAAAATCGTAGGTATCCTCCCGCTCCATTAACCCCTCGATCTCAGCAGAATTGCAAGGCTCGGTCCTGTTTGCCGCCGTTGCAGCCACTGTCAATTGCTCGGAGGAGCTTGGATGAGTGGCCGAAAGCGAGTTCGGATGATATCGGTGAGTGGCCCCAACCCCCAACCCCTAGTGGAAGAGGGAATGGTGAGAGGTTGAAGCTTGATTTGTCATCGATTCAGCGTAACCCAGATAAGAATGGTGGGCTTGTGAAGAGAGATAAGATTGCTTTCTTTGATAAAGAATGCTCAAAAGTGGCCGAACATATTTATCTTGGTGGAGATGCTGTTGCCAAAGATAGGGATATATTGAAGCAGAATGGGATTACCCATATTCTGAATTGTGTGGGTTTTGTTTGTCCTGAGTACTTCAGAGCTGATTTTGTATATAGAACGTTATGGCTGCAGGATAGTCCATCGGAAGATATTACTAGTATTCTGTATGACGTATTTGACTACTTTGAAGATGTTAGGGAACAAAGTGGAAGGGTGTTTGTGCATTGTTGCCAAGGGGTTTCTCGGTCCACATCTCTGGTGATTGCATACCGCATGTGGAGGGAAGGGCAGAGTTTTGATGATGCTTTCCAGTATGTGAAGGCTGCAAGAGGTATAGCTGATCCAAATATGGGTTTTGCCTGCCAACTGCTGCAATGCCAAAAAAGGGTCCATGCATTTCCTCTTAGCCCAAGCTCTTTGCTGAGAATGTATAGAATCGCTCCACACTCACCATATGATCCTTTGCATCTTGTCCCTAAAATGTTGATGGATCCTTCTCCATCTGCTCTGGATTCTAGAGGTGCATTTATCGTACATATATCCTCTGCAATATATGTTTGGATTGGTAAGAATTGTGAGACCATCATGGAAAGGGATGCTAGAGGGGCTGTGGGTCAGATTGTTCGCTATGAGAGAGTGCAAGGCCCAATTATATTGATCAAGGAAGGTGAAGAACCCGATTACTTTTGGGATGCCTTTACAAAATTTTTGCCTTTGATGAACAAATCTTGCAATAGAGCAGAAAATATCAAATCAACTGTTAGGATTTGTCCTGGTGAGAGGAGAGTGGACTCATACAATGTTGATTTTGAAGTTTTCCAGAAAGCTATCATGGGAGGTTTTGTGCCTCCATTTGCATCATCAGAGGATGAACATGAAACCCATCTTCCCGCTAGAGAGAGCTGTTGGAGCGTGTTAAGGCGTAAGTTTGCCTCTGCCAATATGAAGGAATTTGTCTCAGCGCCTAAATTATCCTTTTCAAGGGTTTATTCGGATTCCATTTCTTGTATTCATTCATCAGTAAATTCATGTCCATCATCATCACTGTCATCATCGTCATCTTTATCATCATCTTCTTATTCACCCCCTTATCTCTCTCCAGATTCTATTTCTTCAGATTCAAGCACTAGTTCAAAGTATTTTTCAGAATCATCCCAGGATTCTCCATCTGCAGCTTTGACTTCTGCCCCAGTAACCTCATCTTTGTCTAACTTTTCTAACTTGTCCCTCCTTTCATCCAATTGTACTTCTCCACCGGTATCCAACAGTGCAGAAATTTGTGGTGTCAAGTTAACATCACAGCACTTTTCTAAGTCAGCCTCTTCATTATTGAAAAAACCTTCAACTTCCCTTGCAGAGCGTAGAGGTAGCATGTCAAAGGCTTTGAAGTTGCCACTGATGAATGATAAAAAAGTGGTGATGAATAGACCATCTACATTTCATGCTACTCGAGAAGATGGTGTTGTCATGAATGACAATTTTAGCCATTTGGATCAATCAGAATGTATAGAACATATATCTGATTCCAACAACCATGTGGAGGATAGAGGGTGGGATTCAATTCAGCAGTGTAAGAATTTATTATGTCCAGGTGCTGTAGATAGTTTTAAGTACAATGAAGATTCATTTGTCAGAAACTGTGTTGAACCATGGGTAAAAAATTCTTCAACAGAAGACCAGTCTTCTTCATCAAATGGAATTCATGGAAGCGGTCTATCACAATCTAATACCAAACATAGTTTAGTTTATCACTGGCCCAGATTAGAGAAGATTTTGGCATTTGGTGCAAGTCATCTGGATTCTAAAGCTGCTTTTGTGATTTTCTCTCCAAGTATGAGTTTAGGTAAACATGCAGGAAACATTTTATATTTTTGGATAGGGAGGTCTTTCAACTGTGATACATCTCAGGTTCGGTTAGATAGTGATACAGAGTCAGGTTGTCCAGAAGTGGTTGACTGGAATCAAATTGGTTGTGATGTCCTTGCTCAGTTTGGTTTGCCGAGGGACACAATCATCAAGATTGTTAAAGAGAATGAAGAACCAGAAGAGTTCCTTGCCTTACTGAGTTCATTGTAG 2556 0.4253 MGGKDDARAPCELSGSRKMFWRSASWSASRTAARNPDGEQKDFADPDGSIGNINEQNRRYPPAPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKASSDDIGEWPQPPTPSGRGNGERLKLDLSSIQRNPDKNGGLVKRDKIAFFDKECSKVAEHIYLGGDAVAKDRDILKQNGITHILNCVGFVCPEYFRADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQSGRVFVHCCQGVSRSTSLVIAYRMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLMDPSPSALDSRGAFIVHISSAIYVWIGKNCETIMERDARGAVGQIVRYERVQGPIILIKEGEEPDYFWDAFTKFLPLMNKSCNRAENIKSTVRICPGERRVDSYNVDFEVFQKAIMGGFVPPFASSEDEHETHLPARESCWSVLRRKFASANMKEFVSAPKLSFSRVYSDSISCIHSSVNSCPSSSLSSSSSLSSSSYSPPYLSPDSISSDSSTSSKYFSESSQDSPSAALTSAPVTSSLSNFSNLSLLSSNCTSPPVSNSAEICGVKLTSQHFSKSASSLLKKPSTSLAERRGSMSKALKLPLMNDKKVVMNRPSTFHATREDGVVMNDNFSHLDQSECIEHISDSNNHVEDRGWDSIQQCKNLLCPGAVDSFKYNEDSFVRNCVEPWVKNSSTEDQSSSSNGIHGSGLSQSNTKHSLVYHWPRLEKILAFGASHLDSKAAFVIFSPSMSLGKHAGNILYFWIGRSFNCDTSQVRLDSDTESGCPEVVDWNQIGCDVLAQFGLPRDTIIKIVKENEEPEEFLALLSSL 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0897 851 ProSiteProfiles Dual specificity protein phosphatase domain profile. 150 292 IPR020422 GO:0006470|GO:0008138
Glsi01g0897 851 Gene3D Protein tyrosine phosphatase superfamily 138 292 IPR029021 -
Glsi01g0897 851 SMART dsp_5 150 289 IPR020422 GO:0006470|GO:0008138
Glsi01g0897 851 MobiDBLite consensus disorder prediction 714 733 - -
Glsi01g0897 851 Gene3D Severin 301 397 IPR029006 -
Glsi01g0897 851 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 145 291 IPR029021 -
Glsi01g0897 851 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 209 270 IPR000387 GO:0016311|GO:0016791
Glsi01g0897 851 SUPERFAMILY Actin depolymerizing proteins 297 406 - -
Glsi01g0897 851 ProSitePatterns Tyrosine specific protein phosphatases active site. 234 244 IPR016130 GO:0016311|GO:0016791
Glsi01g0897 851 MobiDBLite consensus disorder prediction 63 77 - -
Glsi01g0897 851 PANTHER MKPA PROTEIN 11 848 - -
Glsi01g0897 851 CDD DSP 151 285 - -
Glsi01g0897 851 Pfam Dual specificity phosphatase, catalytic domain 158 288 IPR000340 GO:0008138|GO:0016311
Glsi01g0897 851 SUPERFAMILY Actin depolymerizing proteins 749 849 - -
Glsi01g0897 851 MobiDBLite consensus disorder prediction 23 78 - -
Glsi01g0897 851 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0897 Glsi-ChrGlsi01 20953730 20959380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0897 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 67.553 5.52e-74 256