Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0895 ATGATGATATCGAGGGGGCTGTTCGGGTGGTCCCCACCTCACATACAGCCGCTCACGCCGGTGTCGGAGGTCTCTGAGCCGCCAGAGTCGCCGTCGCCCTACTTAGACCCGGGAGCCGAGACTTCCGCCTCCCACCAGGTCGAAGTCGAAGAGGAGATTGAGGAGCCTGAGGAGATTGAACCGCCTCCCGCCGCGGTTCCCTTCTCCAGGCTCTTCGCCTGCGCCGACCGGCTCGATTGGTTTCTGATGGTCGTTGGTTCGCTTGCAGCCGCTGCTCATGGCACGGCCCTCGTAGTTTACTTGCACTACTTTGCGAAGATTATTCAGGTGCTGAGGATGGGTTCCGGACAAGGTTCATCGGAGGAACAATTTCACAAGTTCAAGGAGCTGGCCTTAACCATTGTTTATATCGCTGCGGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGCTGGATTTTGACTGGAGAGCGGCAGACTGCTGTCATCAGGTCAAAATATGTTCAAGTATTACTTAACCAAGATATGAGTTTTTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTACTAAGTGATGTGCTGCTCATTCAGTCCGCACTTAGTGAAAAAGTTGGCAATTATATTCATAATATGGCTACATTCTTCAGTGGACTTGTTATTGGATTTATCAACTGTTGGCAGATTGCATTGATAACTTTGGCCACAGGTCCATTTATTGTTGCTGCAGGAGGAATATCAAATATATTCCTTCATGGGCTTGCAGAGAATATTCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCCGTTTCCTATATAAAGACATTGTATGCATTCACAAATGAAACGTTGGCCAAGTATTCATACGCAACATCACTGCAAGCTACTCTTAGATATGGTATCTTAATAAGCCTTGTTCAAGGGCTTGGTCTTGGATTTACATATGGGCTTGCAATATGTTCTTGTGCATTACAACTATGGGTAGGAAGGTTCTTGGTTCTGCATAAAAAAGCTCATGGTGGTGAAATCATAACAGCTCTGTTTGCTGTAATTCTAAGTGGCTTGGGATTGAATCAAGCAGCAACAAATTTCTATTCATTTGATCAAGGACGTATAGCTGCTTATAGATTGTTTGAGATGATAAGCCGGTCATCCTCATCTGTTAATCATGATGGAACTGCCCCAGATTCTGTGCAAGGAAATATAGAGTTTCGGAATGTTTATTTTAGCTATCTGTCTCGTCCTGAAATCCCTATCTTGAGTGGGTTTTATCTGACTGTACCTGCCAAGAAAGCTGTGGCACTTGTTGGCAGAAATGGATCTGGAAAAAGTAGTATCATTCCACTTATGGAGCGGTTCTATGATCCTACATTAGGAGAGGTTCTTTTAGATGGTGAGAACATTAAGAATCTGAAACTGGAATGGTTGAGGAGCCAAATAGGACTAGTTACCCAGGAGCCTGCTTTGCTTAGTTTGAGTATAAGAGACAACATTGCTTATGGACGGGATGCCACTATTGATCAAATTGAAGAGGCTGCTAAAATAGCCCATGCACATACATTTATCAGCTCACTTGAGAAAGGTTATGACACACAGGTTGGAAGGGCTGGTCTAGCTTTGACAGAAGAACAGAAAATAAAACTTTCTATTGCAAGGGCTGTGCTTTTAAATCCATCTATTCTTCTGCTTGATGAGGTAACTGGTGGTCTTGACTTTGAGGCTGAAAGGGCTGTTCAGGAGGCTTTGGATCTCCTTATGTTGGGACGTTCAACAATAATAATTGCTCGAAGGCTTAGTCTTATAAGGAATGCTGATTATATAGCTGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCATGATGAGCTGTTGACCCTGGATGGCTTGTATGCAGAGCTTCTTCGATGTGAAGAGGCAGCAAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGGAGACTTCAGCTTTCCAAATTGAGAAGGATTCTTCAGCAAGCCATAGCTTTAAAGAACCATCATCCCCAAAAATGATGAAGTCACCTTCCCTTCAGAGGCTTTCTGCCGTATTTCGACCTTCAGATGGCATCTTTAACTCACAGGAATCACCAAAAGTTCGGAGCCCCCCACCTGAGAAGATGCTGGAAAATGGCCAGTCTATGGATGCAGCAGTTAAGGAGCCGTCAATACGAAGGCAAGACAGTTTTGAAATGAGACTACCAGAGTTACCCAAGATTGATGTTCAGTCTATTCATCGACAAAAGTCAAATGGTTCTGACCCAGAGTCCCCTGTTTCACCTCTTTTAACATCTGATCCCAAGAATGAACGCTCCCATTCACAGACTTTTAGCAGACCCCATAGTCATTCAGATGATGTTTCAGTGAAAATGAGAGAAGCAAAGGATACTCGACATCGAGAACCACCGTCATTTTGGAGGCTCGCAAAACTTAGTTTTGCAGAGTGGCTTTATGCTGTGTTAGGAAGCATTGGTGCTGCTATCTTTGGTTCTTTCAATCCTCTTCTTGCATATGTTATTGGGCTGGTTGTGACAGCTTACTATAGAATTGATGAAGATAATCACTTACGACAGGAGGTTGACAAGTGGTGCTTGATCATTGCCTGCATGGGCATTGTGACAGTTGTTGCTAACTTCTTACAGCATTTCTACTTTGGTATTATGGGGGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGTTGGATGGTTTGATGAAGAGGAAAACAGTGCTGACAATTTATCCATGCGCTTGGCCAATGATGCTACATTTGTACGAGCTGCTTTTAGTAACCGACTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGCTGTTCTCATTGGTGCATTGCTGCACTGGCGATTAGCACTTGTGGCATTAGCAACCCTTCCCATTCTCTGTATTTCTGCCATTGCCCAGAAATTGTGGCTTGCTGGTTTTTCAAGGGGCATACAGGAAATGCACAGGAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGAAACATTTACACTGTTGTAGCATTTTGTGCTGGTAATAAGGTAATGGAGCTCTATAGGCTGCAGTTAAAGAAAATATTTAAGCAGAGCTTTCTTCATGGTATGGCCATTGGTTTTGCTTTTGGCTTTTCACAATTTCTACTTTTTGCTTGTAATGCCCTTTTACTGTGGTACACTGCAATATGCATAAAGAAAGGCTATATAGATCCGCCTACTGCACTCAAGGAGTACATGGTTTTCTCATTTGCAACATTTGCACTTGTGGAACCTTTTGGATTAGCTCCTTACATACTTAAACGGCGTAAATCTCTCATTTCTGTATTTGAAATTATAGATCGTGTGCCTAAAATTGATCCTGATGATAACTCAGCATTGAAGCCTCCCAATATATATGGAAGCATTGAGTTGAAAAATGTTGATTTTTGTTATCCATCTCGACCGGAAGTGTTGGTACTGAGCAATTTTACTCTTAAAGTCAGTGGGGGCCAAACAATTGCAGTTGTGGGAGTTTCAGGGTCAGGAAAGAGCACTATAATATCTTTGATTGAGAGGTTTTATGATCCAGTTGCTGGCCAAGTTTTATTAGATGGTAGGGATTTAAAGCTATACAATATGAGATGGTTGAGGAGCCACCTTGGTCTGGTTCAGCAGGAACCTATTATCTTCTCAACGACCATAAGGGAAAACATCATATATGCAAGGCATAATGCTAGTGAAGCTGAGATGAAAGAGGCTGCAAGAATAGCAAATGCTCACCATTTCATAAGCAGCTTGCCTCATGGTTATGACACTCATGTTGGAATGAGAGGTGTTGACTTAACCCCTGGACAGAAACAGAGAATTGCAATTGCAAGGGTAGTGCTAAAAAATGCACCTATCTTGTTGTTGGATGAAGCAAGTTCATCAATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACACTAATAATGGGAAACAAGACCACCATCCTAATAGCACATAGAGCTGCAATGATGCGGCATGTGGACAACATAGTAGTGCTTAACGGAGGACGAATAGTGGAGGAAGGGACCCATGATTCATTGGTGGCAAAGAATGGTCTGTATGTCCGATTGATGCAACCACACTTTGGAAAGGCATTGCGTCATCAACGACTTGTTTAG 4212 0.4302 MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDPGAETSASHQVEVEEEIEEPEEIEPPPAAVPFSRLFACADRLDWFLMVVGSLAAAAHGTALVVYLHYFAKIIQVLRMGSGQGSSEEQFHKFKELALTIVYIAAGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGFINCWQIALITLATGPFIVAAGGISNIFLHGLAENIQDAYAEAASIAEQAVSYIKTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVLHKKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSVNHDGTAPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATIDQIEEAAKIAHAHTFISSLEKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLRCEEAAKLPKRMPVRNYKETSAFQIEKDSSASHSFKEPSSPKMMKSPSLQRLSAVFRPSDGIFNSQESPKVRSPPPEKMLENGQSMDAAVKEPSIRRQDSFEMRLPELPKIDVQSIHRQKSNGSDPESPVSPLLTSDPKNERSHSQTFSRPHSHSDDVSVKMREAKDTRHREPPSFWRLAKLSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYRIDEDNHLRQEVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVLIGALLHWRLALVALATLPILCISAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICIKKGYIDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDNSALKPPNIYGSIELKNVDFCYPSRPEVLVLSNFTLKVSGGQTIAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNMRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKALRHQRLV 1403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0895 1403 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 831 1123 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi01g0895 1403 FunFam ABC transporter B family member 20 397 644 - -
Glsi01g0895 1403 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1154 1391 IPR003439 GO:0005524
Glsi01g0895 1403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1143 1390 IPR027417 -
Glsi01g0895 1403 MobiDBLite consensus disorder prediction 663 722 - -
Glsi01g0895 1403 MobiDBLite consensus disorder prediction 783 807 - -
Glsi01g0895 1403 FunFam ABC transporter B family member 6 771 999 - -
Glsi01g0895 1403 Pfam ABC transporter 428 572 IPR003439 GO:0005524
Glsi01g0895 1403 CDD ABC_6TM_Pgp_ABCB1_D2_like 820 1137 - -
Glsi01g0895 1403 MobiDBLite consensus disorder prediction 755 782 - -
Glsi01g0895 1403 FunFam ABC transporter B family member 20 1144 1393 - -
Glsi01g0895 1403 PANTHER ABC TRANSPORTER B FAMILY 48 842 IPR039421 -
Glsi01g0895 1403 SMART AAA_5 1181 1368 IPR003593 GO:0016887
Glsi01g0895 1403 SMART AAA_5 434 613 IPR003593 GO:0016887
Glsi01g0895 1403 Pfam ABC transporter 1172 1320 IPR003439 GO:0005524
Glsi01g0895 1403 MobiDBLite consensus disorder prediction 18 62 - -
Glsi01g0895 1403 SUPERFAMILY ABC transporter transmembrane region 817 1139 IPR036640 GO:0005524|GO:0016020
Glsi01g0895 1403 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi01g0895 1403 Gene3D - 397 644 IPR027417 -
Glsi01g0895 1403 Gene3D ABC transporter type 1, transmembrane domain 1001 1151 IPR036640 GO:0005524|GO:0016020
Glsi01g0895 1403 Gene3D ABC transporter type 1, transmembrane domain 770 995 IPR036640 GO:0005524|GO:0016020
Glsi01g0895 1403 MobiDBLite consensus disorder prediction 746 807 - -
Glsi01g0895 1403 FunFam ABC transporter B family member 20 70 409 - -
Glsi01g0895 1403 SUPERFAMILY ABC transporter transmembrane region 69 382 IPR036640 GO:0005524|GO:0016020
Glsi01g0895 1403 Gene3D - 1152 1391 IPR027417 -
Glsi01g0895 1403 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 642 IPR003439 GO:0005524
Glsi01g0895 1403 Gene3D ABC transporter type 1, transmembrane domain 70 661 IPR036640 GO:0005524|GO:0016020
Glsi01g0895 1403 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 382 - -
Glsi01g0895 1403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 641 IPR027417 -
Glsi01g0895 1403 MobiDBLite consensus disorder prediction 663 687 - -
Glsi01g0895 1403 FunFam ABC transporter B family member 6 1001 1151 - -
Glsi01g0895 1403 Pfam ABC transporter transmembrane region 836 1100 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi01g0895 1403 Pfam ABC transporter transmembrane region 85 357 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0895 Glsi-ChrGlsi01 20533267 20545373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0895 53 700 Calmodulin-binding Proteins AT2G36910 44.870 8.45e-171 543