Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0891 ATGGTTCTATCGAACAAGAAGCTAAAACAGAAGCTGAGAGCGGAGTTAGCTGAGTCCGTGGCAAAATCTCACGCGGAAAAGTGCTCTAATATTGATGAACCAACAAATCTAGACTTCAGTTCCGATCCACAGGGCTCTTTGAAAAAGCTTCTGGACTCGGCGACTCCGAAACCCAGATTATCAAAGAGAGAGAAACGCAGAAAGGCTCGCTCTTTGCAACGCCCTGAAGGTACCCAAGAAGGTGGTGATAATGGTGCCATTGATGGGAATAAAGAAGACGAGGGAAAGAATAAAACTGGGTTGGAGGGTTTAGGCCAGAAGAAGAACAAAAAGAGAAAGAAGAATGTTGAGGACGAAGTGGCAAATGACGTAGTGAAGGATGCGAAGAAAGCTAAGAAGAGGCTTAAGAAGAAGCAGAAGAAGGCCAAAACAGCAGAGAAAAAGGGCGCTAATCCTGGAGATGAAAAGTTAGAGGCCTTAGAGTTAACTATGATTAATGCCAGTGAAGAAAATGGTGATGTTCCTACAAAAGTTTATGTTGGAGGAATACCATATTATTCAACCGAAGATGATATTCGAAGCTACTTTGAAGGCTGTGGCACAGTAATTGAAGTTGATTCCATGAAGTTTCCTGAGAGTGGAAAATTTCGAGGGATTGCCATTATTAGTTTTAAGACTGAAGCTGCTGCAAAACGAGCCTTGGGTCTCGATGGAGCTGACATGGGTGGACTCTTTCTTAAAATCCAACCTTATAAAACAATTCGAGCCAGTAAAGCATCCAATTTTGCCCCAGAAATTGTGGAGGGCTACAATAGAATCTATGTTGGAAATTTGCCGTGGGATATAACTGAGGATAAACTAAGGAAACTATTATCAAATTGCAGTATTTCATCCATACGATTTGGTATGGACAAGGAGACAGGAGAATTCCGGGGGTATGCTCATGTGGATTTCACTGATAGTAAGTCATTGAAAAGGGCACTTACCTTGGATCAAAAGGTTATGTATGGGAGACCTGTTAGGATAAGTTGTGCAGTTCCTCTGAAGAAGGCAGGAAACCATTCACCTGACATGCCTACAAATAAGGGAGTTGACAGTGAGAAATCAAGTTCCACTGGAAATGGCAAAATGAAGAGAAGGACATGCTATGAGTGTGGTGAAAAGGGACATATTTCTTCGGCATGCCCAAAAAACCAAACTGTTGATTCAACTACAAGCTAA 1221 0.4201 MVLSNKKLKQKLRAELAESVAKSHAEKCSNIDEPTNLDFSSDPQGSLKKLLDSATPKPRLSKREKRRKARSLQRPEGTQEGGDNGAIDGNKEDEGKNKTGLEGLGQKKNKKRKKNVEDEVANDVVKDAKKAKKRLKKKQKKAKTAEKKGANPGDEKLEALELTMINASEENGDVPTKVYVGGIPYYSTEDDIRSYFEGCGTVIEVDSMKFPESGKFRGIAIISFKTEAAAKRALGLDGADMGGLFLKIQPYKTIRASKASNFAPEIVEGYNRIYVGNLPWDITEDKLRKLLSNCSISSIRFGMDKETGEFRGYAHVDFTDSKSLKRALTLDQKVMYGRPVRISCAVPLKKAGNHSPDMPTNKGVDSEKSSSTGNGKMKRRTCYECGEKGHISSACPKNQTVDSTTS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0891 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 253 IPR000504 GO:0003723
Glsi01g0891 406 MobiDBLite consensus disorder prediction 130 144 - -
Glsi01g0891 406 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 68 251 - -
Glsi01g0891 406 MobiDBLite consensus disorder prediction 23 154 - -
Glsi01g0891 406 SUPERFAMILY RNA-binding domain, RBD 264 353 IPR035979 GO:0003676
Glsi01g0891 406 Pfam Zinc knuckle 380 397 IPR001878 GO:0003676|GO:0008270
Glsi01g0891 406 ProSiteProfiles Zinc finger CCHC-type profile. 382 397 IPR001878 GO:0003676|GO:0008270
Glsi01g0891 406 SMART c2hcfinal6 381 397 IPR001878 GO:0003676|GO:0008270
Glsi01g0891 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 340 IPR000504 GO:0003723
Glsi01g0891 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 244 IPR000504 GO:0003723
Glsi01g0891 406 MobiDBLite consensus disorder prediction 359 377 - -
Glsi01g0891 406 SUPERFAMILY Retrovirus zinc finger-like domains 369 399 IPR036875 GO:0003676|GO:0008270
Glsi01g0891 406 Gene3D - 360 405 - -
Glsi01g0891 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 347 IPR000504 GO:0003723
Glsi01g0891 406 SMART rrm1_1 177 249 IPR000504 GO:0003723
Glsi01g0891 406 SMART rrm1_1 272 343 IPR000504 GO:0003723
Glsi01g0891 406 MobiDBLite consensus disorder prediction 33 48 - -
Glsi01g0891 406 Gene3D - 102 249 IPR012677 -
Glsi01g0891 406 SUPERFAMILY RNA-binding domain, RBD 173 253 IPR035979 GO:0003676
Glsi01g0891 406 MobiDBLite consensus disorder prediction 86 129 - -
Glsi01g0891 406 Gene3D - 265 354 IPR012677 -
Glsi01g0891 406 MobiDBLite consensus disorder prediction 351 378 - -
Glsi01g0891 406 CDD RRM1_PHIP1 178 249 IPR034361 -
Glsi01g0891 406 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0891 Glsi-ChrGlsi01 20341631 20347679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0891 176 345 Eukaryotic Initiation Factors Gene Family AT2G36660 25.414 5.25e-06 46.6