Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0888 ATGTTGCTTTCTCGCGGAGACCGATTCGAGGCAGTCCCCTCTAATAATGAGTACTCTTCGAACAGCCACCGCGTATTTGAGTGCAAGACTTGCAACCGGCAATTCCCATCGTTTCAGGCGCTCGGTGGCCACCGGGCTAGCCACAAGAAGCCGAGGTTTCCTGGAGGAGTTGGAGAGCTTGAGAGCCAGTTGCATCATGATGACTCCCCTGCCAAGCCTAAAACGCATGAGTGCTCCATTTGTGGATTAGAGTTTGCAATAGGGCAGGCTTTGGGTGGTCACATGAGAAGGCATAGGGCAGCAGCTTTGAATAACAAAATGACCAATTCTATGACTATGAGCAGTAGTAGCAGTGGTAGCAGTCTTAATTCTTCACCTATGAGCGAGAAAAAGGTTAACACCAACAGAAAGAGAGTTTTGTTTTTGGATTTGAACTTGACTCCTATTGAGAATGATTTGGAGCTTCTCAAAGTTGGGAAGGTAACTCCTTTGGTAGATTGCTTCGACTGA 510 0.4725 MLLSRGDRFEAVPSNNEYSSNSHRVFECKTCNRQFPSFQALGGHRASHKKPRFPGGVGELESQLHHDDSPAKPKTHECSICGLEFAIGQALGGHMRRHRAAALNNKMTNSMTMSSSSSGSSLNSSPMSEKKVNTNRKRVLFLDLNLTPIENDLELLKVGKVTPLVDCFD 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0888 169 MobiDBLite consensus disorder prediction 109 130 - -
Glsi01g0888 169 SUPERFAMILY beta-beta-alpha zinc fingers 24 98 IPR036236 -
Glsi01g0888 169 MobiDBLite consensus disorder prediction 41 73 - -
Glsi01g0888 169 Gene3D Classic Zinc Finger 23 98 - -
Glsi01g0888 169 PANTHER ZINC FINGER PROTEIN ZAT5 19 152 - -
Glsi01g0888 169 Pfam C2H2-type zinc finger 25 51 - -
Glsi01g0888 169 Pfam C2H2-type zinc finger 76 100 - -
Glsi01g0888 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Glsi01g0888 169 MobiDBLite consensus disorder prediction 109 132 - -
Glsi01g0888 169 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Glsi01g0888 169 SMART c2h2final6 76 98 IPR013087 -
Glsi01g0888 169 SMART c2h2final6 26 48 IPR013087 -
Glsi01g0888 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Glsi01g0888 169 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0888 Glsi-ChrGlsi01 20097032 20097541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0888 1 166 C2H2 Transcription Factor Family AT2G37430 42.169 3.27e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi01g0888 zf-C2H2_6 8.2e-10 CL0361