LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi01g0885	ATGTCTTTTCAGCATAAAAGCTTTTGGATGCCACGGGATGCAGGATGCTTAGCTGAAGAAAATATGGGATATGAGAACTCTTCCAGAATTGAGCCAAAGCGTGGTCATCAGTGGTTTATGGAAGCAGGTGAACCTGAAATTATCAGCAACAATAAGAAGCAAGCAATTGAAGCTGTTAGTGGCAGGCCAGTTTCAGGGATTTCACCTTTAAATGTATCTCCTTGGGACACCAATTCAGGATTTCACTCAGTTACAGGTCAATTTGCAGATCGTCTCTTTGGATCTGAGCCTGTACGAACTTTCAATTTGGTTGATAAGAACATGCCATCAATTGGAAGTGGAAATATGAATATGGGAAGGAAGGATTTTGAGAATAATTATGGAAATGATCCTTGTGTGGGATTAACTATATCTCATACTATTGAGGACCCTTCATCTTGTCTCAATTTTGGTGGCATCAGAAAAGTTAAAGTTAATCAAGTCAGAGATACTAACAATTGCATGTCTGCAACCATGGGGCACTCCTATACTAGGGCAGATAATGGTGCAATTTCAATAGGTGCTGGCTATAGTAAGAATGATGGCAATATATCATTGGGTCAGACTTATAACAATGGAAATGAGAATATTATCTCTGTGGGAACTACAATAAGCAAGGCTGATGACAATTTTGTTTCAATGGGTCACACCTTCAATAAGGGAGATGGAAGTTTTATGTTGATGGGCCACAATTATGGCAAGGGAGATGAAAGTATCTTATCAATGGGTCAGCCCTTTGACCGGGGAGATGGAAATTTCATATCAATGGGTCAGTCATATGAAAAGGTAGATAGCAATATGATATCATTGGGTAACTCATATAACAAGGGGCATGAAAACTTTATATCAATGGGCCCATCATACAGTAAATCTGGAGAAAATTTTATATCAATTGCTCCTTCCTATGACAAGGGGACTGATCATATCATAGCAGTGGGTCCCACATATGACAAGGTGGATTCGAGCATTGTATCAAGAAATCCTTCATATGATAAAGGAGATTCTAGCTCTTTACCTGTGTGTCAGAACTACAATAAGGGTGAGGGCTGTACCATATCTTTCGGAGGCTTTCATGATGATCCGGAGCCAAATCCCTCTGGTGGGATCATTAGTGGCTATGATCTATTGATGGGCAACCAGAACTCAGCTCAAGGTTTGGATGGTCAGAAGGATCTGATTGAGTCAAACCCTGAACCAACTGTAAATAGCAATCCAAAATCTAATTCTAAAACTGATACTATCCTTAAGAATAAGGAACCAAAGACAGGTAAGAAGGCTCCTCCAAATAACTTCCCTTCAAATGTTAAAAGTCTGTTATCAACTGGTATTTTTGATGGTGTTCCTGTGAAGTATGTTTCTTGGTCACGAGAGAAAAATCTTAAAGGAGTCATAAAAGGGACTGGGTATTTGTGTTCGTGTGATGACTGTAAGCAATCCAAGGCTCTTAATGCATATGAGTTTGAGCGTCATGCTGGTGCCAAGACCAAACACCCTAACAATCACATATACTTTGAGAACGGAAAAACCATCTATGCTGTTGTTCAAGAGCTAAAGAACACTCCTCAGGAGATGCTTTTTGATGCAATTCAAACTGTTACTGGATCTCCCATCAACCAGAAAAATTTTCGTATCTGGAAAGCATCATACCAAGCTGCTACCCGGGAACTTCAGCGTATATATGGAAAGGATGAAGTGATCATACCATCTTGA	1749	0.3974	MSFQHKSFWMPRDAGCLAEENMGYENSSRIEPKRGHQWFMEAGEPEIISNNKKQAIEAVSGRPVSGISPLNVSPWDTNSGFHSVTGQFADRLFGSEPVRTFNLVDKNMPSIGSGNMNMGRKDFENNYGNDPCVGLTISHTIEDPSSCLNFGGIRKVKVNQVRDTNNCMSATMGHSYTRADNGAISIGAGYSKNDGNISLGQTYNNGNENIISVGTTISKADDNFVSMGHTFNKGDGSFMLMGHNYGKGDESILSMGQPFDRGDGNFISMGQSYEKVDSNMISLGNSYNKGHENFISMGPSYSKSGENFISIAPSYDKGTDHIIAVGPTYDKVDSSIVSRNPSYDKGDSSSLPVCQNYNKGEGCTISFGGFHDDPEPNPSGGIISGYDLLMGNQNSAQGLDGQKDLIESNPEPTVNSNPKSNSKTDTILKNKEPKTGKKAPPNNFPSNVKSLLSTGIFDGVPVKYVSWSREKNLKGVIKGTGYLCSCDDCKQSKALNAYEFERHAGAKTKHPNNHIYFENGKTIYAVVQELKNTPQEMLFDAIQTVTGSPINQKNFRIWKASYQAATRELQRIYGKDEVIIPS	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi01g0885	582	MobiDBLite	consensus disorder prediction	393	424	-	-
	Glsi01g0885	582	SUPERFAMILY	Porins	173	349	-	-
	Glsi01g0885	582	MobiDBLite	consensus disorder prediction	393	444	-	-
	Glsi01g0885	582	PANTHER	AUTOIMMUNE REGULATOR	8	525	-	-
	Glsi01g0885	582	Pfam	Tify domain binding domain	475	530	IPR032308	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi01g0885	Glsi-ChrGlsi01	19714443	19726104	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi01g0885	434	563	PHD Transcription Factor Family	AT3G53680	54.615	1.41e-39	152