Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0877 ATGAGTAATTCTCTTCTACCGTTAGTGTCTTCTCAGCTTCCCTGCTACGGGAACAATGAAGCTCAGTTGGAAAATTTGAAAGCTTGCATGCAGATGGACGACCTCATCGGTCATTTTCATGGCAATGGATTCTATTTGGAGTCTATAATATTCAACAACAACAGCCAGTTGGATAAAGGAGGCTATACGATGCCTGGCCAGACTCAGTCCATTATTTTTCATGGCTACAATCATCAACCAGGTAATCTATATGGTATCTCCAGCAGAGAAGACATTTCTCGGCAATCATCGTTGACCCGCAAGAGACCTTCGGATTCTCAATATGAAGGAGTCAGAGGAAAAGCAAGAAAACGTCCGTCTGAGGTCATTGACAACATGGCACTGTTTAAAAAGATGGAAGGCAAACCCGAAAGCAAAATTACAATGTTGGAACCAAAATGGCATCAGGGCAAAGAGAGTTTAGAGAAAATCCCTGGAAACAAATTGCATGTGCCTGTGAGGAGAAATCAAAAGCTTAGTGATAAAATAACAACTCTACAAAAGCTGGTTTCGCCTTTTGGCAAGACTGACACTGCCTCAGTTCTACATGAGGCTTCTCTTTATATCAAGTTGCTTCAAGAACAAATCCAGATGCTGAGTCTCTCATACAATAACACTGTTCAAGTTCCTCATAAACAGATGGAGTGTGGGGGAAAAGTGGTTGATCTAAGGAGCAGAGGACTTTGTTTGGTCCCCATATCAATCACACCGAAAGTAACAATTGGAAGGCCAGATTAA 777 0.4183 MSNSLLPLVSSQLPCYGNNEAQLENLKACMQMDDLIGHFHGNGFYLESIIFNNNSQLDKGGYTMPGQTQSIIFHGYNHQPGNLYGISSREDISRQSSLTRKRPSDSQYEGVRGKARKRPSEVIDNMALFKKMEGKPESKITMLEPKWHQGKESLEKIPGNKLHVPVRRNQKLSDKITTLQKLVSPFGKTDTASVLHEASLYIKLLQEQIQMLSLSYNNTVQVPHKQMECGGKVVDLRSRGLCLVPISITPKVTIGRPD 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0877 258 CDD bHLH_AtbHLH_like 167 213 IPR045239 -
Glsi01g0877 258 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 152 250 - -
Glsi01g0877 258 Gene3D - 165 227 IPR036638 GO:0046983
Glsi01g0877 258 MobiDBLite consensus disorder prediction 91 116 - -
Glsi01g0877 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Glsi01g0877 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 216 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0877 Glsi-ChrGlsi01 19211613 19216824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0877 166 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 48.936 1.81e-19 85.1