Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0862 ATGCAGTTGTCACTGTGCCTGCTTGCTTCAATGACTCAGCGTCAAGCCACCAAAGATGCTAGTGCTATTGCTAGTCTCAACGTTATGCGAATAATCAACAAGCCCACTCCTGCAGCTATTGCTTATGATGGTATCTTTGAAGTTAAGGCCATTGGTGGGGACACTCACCTTGGAGGAAAGGACTTTGACAACAGAATGGTGAACCACTTTGTACAGGTGTTGAGGAAGCTTAAGAAGGACAATAGCAGGAATCCAAAGGCACTTAAGAGGCTACAAACTGAGTGTGAGAAGGCAAAGGGGGCACTCTCATCTACTGGTGAAACCAACATTGAGATATATTCCTTATATGAGGGCATTGACTTCCATTCATCAATCACCCGTGCTAGGTTTGAGGAACTGAACATAGATCTCTTCAAGAAGTGTTTGGAGACTATAGAGAAGTGTCTTTGGGATGTTAATATGGACAAGAGCAGTGTCCATGATGTTGTCCTTATAGAAGGAGGTCTCATGAATGTAATAATTCCAAGAAACACTATCATTCCTACAAGCGTGGAAGATTCATTTACTACACATTTTGATAACCAAAGCAATGTCTTGATTCATGTTTATGAGGGTTTTGTCTTTGCCATTGATACTAATGGAATCTTAAATGTCTTTGCTGACGAACAAACCACTGGGATGATGAAAAAGATTACCATAACCAATGAAAATGGAAGATTATCAAAGAAAGAAATTAAGAGGATGGTTCAAGAGGCTGAGAAATACAAGGCCAAAGATGAGAGGTACAAAAAGAAGGTTAAAGCAAAGAATGCTTTGGAGAAATATGCATACAACATAAGGAATGCTATAAAATATGAGGAGATTGGCTCAAAGCTTTCCCCAACAGATAAGAAGAAGATTGAGAGTGCAATTGAGGAGACTTTACTATGGCTTGACTCTAACTAG 945 0.3979 MQLSLCLLASMTQRQATKDASAIASLNVMRIINKPTPAAIAYDGIFEVKAIGGDTHLGGKDFDNRMVNHFVQVLRKLKKDNSRNPKALKRLQTECEKAKGALSSTGETNIEIYSLYEGIDFHSSITRARFEELNIDLFKKCLETIEKCLWDVNMDKSSVHDVVLIEGGLMNVIIPRNTIIPTSVEDSFTTHFDNQSNVLIHVYEGFVFAIDTNGILNVFADEQTTGMMKKITITNENGRLSKKEIKRMVQEAEKYKAKDERYKKKVKAKNALEKYAYNIRNAIKYEEIGSKLSPTDKKKIESAIEETLLWLDSN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0862 314 SUPERFAMILY Actin-like ATPase domain 12 42 IPR043129 -
Glsi01g0862 314 Pfam Hsp70 protein 12 42 IPR013126 GO:0005524|GO:0140662
Glsi01g0862 314 Pfam Hsp70 protein 208 306 IPR013126 GO:0005524|GO:0140662
Glsi01g0862 314 Pfam Hsp70 protein 43 167 IPR013126 GO:0005524|GO:0140662
Glsi01g0862 314 Gene3D - 8 55 - -
Glsi01g0862 314 Gene3D Actin; Chain A, domain 4 58 140 - -
Glsi01g0862 314 FunFam Heat shock 70 kDa 58 140 - -
Glsi01g0862 314 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 268 314 IPR029048 -
Glsi01g0862 314 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 151 205 IPR029047 -
Glsi01g0862 314 FunFam heat shock 70 kDa protein-like 6 57 - -
Glsi01g0862 314 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 206 268 IPR029047 -
Glsi01g0862 314 PANTHER HEAT SHOCK PROTEIN 70KDA 167 307 IPR013126 GO:0005524|GO:0140662
Glsi01g0862 314 SUPERFAMILY Actin-like ATPase domain 42 169 IPR043129 -
Glsi01g0862 314 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 163 273 IPR029047 -
Glsi01g0862 314 Gene3D - 269 314 IPR029048 -
Glsi01g0862 314 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0862 Glsi-ChrGlsi01 18057325 18058659 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0862 12 314 Calmodulin-binding Proteins AT3G12580 46.544 9.99e-115 343