Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0861 ATGGTGCCTGCCAGAAAAGGCAAAGAGGAGATTGACTGAGTCTCTCTCCTCCTCTCAACCTTTTCACTCTTCCTCTCTGTCGCCTTCTCCATCCCATTCCCCCTCGGCAATTCCCAAGGTCAAGCTTTTCGAATCCCCTTCAACTCGATCCTTTTTCAATGCCGTTTAGATCTGTTCCTTAAGATGGCAGATGCTGAGGACATTCAACCTCTCGTTTGTGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCTCCCCGCGCTGTGTTTCCCAGCATTGTTGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAGAAAGATGCATATGTTGGTGATGAAGCACAGTCCAAGCGTGGTATTCTGACTCTCAAGTACCCTATTGAGCATGGAATTGTGAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACCTTCTATAATGAACTTCGTGTTGCCCCAGAAGAGCATCCAGTTTTGCTAACTGAGGCTCCTCTTAATCCCAAGGCCAATCGGGAGAAGATGACTCAAATCATGTTTGAGACTTTTAATACCCCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCACTGTATGCTAGTGGGCGTACAACTGGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTCCCTATTTATGAGGGTTATGCCCTCCCGCATGCCATCCTTCGTCTTGACCTGGCAGGCCGTGACCTCACTGAATACTTGATGAAAATTTTGACTGAACGTGGGTATTCTTTTACCACCTCAGCAGAGCGTGAAATTGTGAGGGATGTGAAGGAAAAGTTGGCTTATATTGCCCTTGACTATGAGCAAGAGCTAGAGACTGCCAAGACCAGCTCTGCAGTGGAGAAGAGCTACGAGTTGCCTGATGGGCAGGTCATCACTATTGGTGCTGAGCGTTTCAGATGTCCAGAGGTCCTGTTCCAACCATCCTTGATTGGAATGGAAGCAGCAGGCATTCATGAGACAACATATAACTCCATCATGAAGTGTGACGTTGATATCAGGAAAGACCTGTACGGCAACATTGTCCTCTCAGGAGGCTCAACTATGTTTGCTGGCATTGCTGATAGAATGAGTAAGGAAATTTCTGCATTAGCCCCAAGCAGCATGAAGATCAAGGTGGTAGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCATCCCTTAGCACCTTCCAGCAGATGTGGATTGCGAAGGCAGAGTATGATGAGTCTGGACCATCCATTGTGCATAGAAAATGCTTCTAA 1317 0.4723 MVPARKGKEEIDXVSLLLSTFSLFLSVAFSIPFPLGNSQGQAFRIPFNSILFQCRLDLFLKMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFAGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0861 438 Gene3D - 201 401 - -
Glsi01g0861 438 SUPERFAMILY Actin-like ATPase domain 210 438 IPR043129 -
Glsi01g0861 438 CDD NBD_sugar-kinase_HSP70_actin 71 244 - -
Glsi01g0861 438 FunFam Actin, alpha skeletal muscle 392 438 - -
Glsi01g0861 438 FunFam Actin, muscle 243 334 - -
Glsi01g0861 438 PANTHER ACTIN 70 431 IPR004000 -
Glsi01g0861 438 SMART actin_3 68 438 IPR004000 -
Glsi01g0861 438 FunFam Actin, alpha skeletal muscle 316 391 - -
Glsi01g0861 438 ProSitePatterns Actins signature 1. 116 126 IPR004001 -
Glsi01g0861 438 PRINTS Actin signature 124 146 IPR004000 -
Glsi01g0861 438 PRINTS Actin signature 89 98 IPR004000 -
Glsi01g0861 438 PRINTS Actin signature 299 315 IPR004000 -
Glsi01g0861 438 PRINTS Actin signature 112 123 IPR004000 -
Glsi01g0861 438 PRINTS Actin signature 178 191 IPR004000 -
Glsi01g0861 438 PRINTS Actin signature 203 222 IPR004000 -
Glsi01g0861 438 ProSitePatterns Actins and actin-related proteins signature. 167 179 IPR020902 -
Glsi01g0861 438 Gene3D - 71 432 - -
Glsi01g0861 438 Gene3D Actin; Chain A, domain 4 243 334 - -
Glsi01g0861 438 FunFam Actin, alpha skeletal muscle 97 134 - -
Glsi01g0861 438 FunFam Actin, alpha skeletal muscle 64 224 - -
Glsi01g0861 438 ProSitePatterns Actins signature 2. 419 427 IPR004001 -
Glsi01g0861 438 SUPERFAMILY Actin-like ATPase domain 67 216 IPR043129 -
Glsi01g0861 438 Pfam Actin 66 438 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0861 Glsi-ChrGlsi01 17962909 17966158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0861 62 438 Cytoskeleton Gene Families AT3G12110 97.347 0.0 769