Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0848 ATGAATACATTTTCACATGTTCCTCCAGGCTTTCAGTTCCATCCCACTGATGAGGAACTTGTTGATTACTACCTTAGAAAGAAGGTAGCTTCAAAAAGGATTGATCTAGATGTCATCAAAGATGTCGATCTCTACGGAATTGAGCCATGGGATCTTCAAGAAAGCCCCAAAGTTGCTCAATCAGCCAACATCCCTTATGGTTACGATGGCACTCAACAGAATCTGCACTCGCTTTATGCTACCAATGACCAAGCAGTGGACCAAGTTACTGACTGGCGAGTACTTGACAAATTCGTTACTTCTCAGCTCAGTCGAGACCAAGATTATGCTTCCAAGGAAACTGGTTATTCCAATACTGCAACTGTGGCTAAACAAGTTGGTGTGGAAAGTTCTGCATAG 399 0.4286 MNTFSHVPPGFQFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYGIEPWDLQESPKVAQSANIPYGYDGTQQNLHSLYATNDQAVDQVTDWRVLDKFVTSQLSRDQDYASKETGYSNTATVAKQVGVESSA 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0848 132 SUPERFAMILY NAC domain 5 56 IPR036093 GO:0003677|GO:0006355
Glsi01g0848 132 Gene3D NAC domain 16 85 IPR036093 GO:0003677|GO:0006355
Glsi01g0848 132 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 60 - -
Glsi01g0848 132 Pfam No apical meristem (NAM) protein 8 56 IPR003441 GO:0003677|GO:0006355
Glsi01g0848 132 ProSiteProfiles NAC domain profile. 7 132 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0848 Glsi-ChrGlsi01 17282312 17284851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0848 1 60 NAC Transcription Factor Family AT1G12260 80.000 1.57e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi01g0848 NAM 1.9e-14 No_clan