Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0838 ATGGCTGATATTGATTACCACGCAAAACCCAGTACTAAAACCTCCTCCCCATCTCTGAAACTCTTTGGCTTCAACATTCACAAAGACGCTGATGCAGATTCAAAGAAATATCCATCTGGGTCCCCGGAATCTGAAACTTTCAACTCCGCCGACATTTCTGGCAGGAAATATGAGTGCCAGTACTGCCGCCGAGAGTTCGCCAATTCGCAAGCTCTTGGAGGACACCAAAATGCACACAAGAAAGAAAGGCAGCTCCTGAAACGTGCTCAAATGCAAGCTGCTCGTGGATTTGCTTGTTCAGTACGTGTCCAAAACACAATCGTGTCTGGTTTCTCGCCATCAAATCATCTCCTTGCCAGTGCACCGGCTCCGCCTCATTCATCTTCATGGTTATACACGCCACAAGCAGGCAGTCCCCCAGGTTTTGGCATAAGCGGTGTATATCATTCAGGAGCCTTTGCTGCGCCGCCGGGAAGACGTGTCTATGCCACCGGTGGTTTTGGAGGGTCCGTCACAACTGCTTTGCCAGATGCCAGAGCCCGTCCTCTACCGGCATTTGGTGTCTACAACGGCGGCGATAATGGTGGCCGTCATAGTGAACAAGGCTTTGGTTTGGATTTACATCTTAGTCTATAG 636 0.5 MADIDYHAKPSTKTSSPSLKLFGFNIHKDADADSKKYPSGSPESETFNSADISGRKYECQYCRREFANSQALGGHQNAHKKERQLLKRAQMQAARGFACSVRVQNTIVSGFSPSNHLLASAPAPPHSSSWLYTPQAGSPPGFGISGVYHSGAFAAPPGRRVYATGGFGGSVTTALPDARARPLPAFGVYNGGDNGGRHSEQGFGLDLHLSL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0838 211 SUPERFAMILY beta-beta-alpha zinc fingers 54 84 IPR036236 -
Glsi01g0838 211 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Glsi01g0838 211 PANTHER ZINC FINGER PROTEIN 5 1 211 IPR044299 GO:0010090
Glsi01g0838 211 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Glsi01g0838 211 Gene3D Classic Zinc Finger 45 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0838 Glsi-ChrGlsi01 17018201 17018836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0838 1 211 C2H2 Transcription Factor Family AT1G68360 38.400 4.02e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi01g0838 None None None