Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0820 ATGATCTCTATCTCTCCCTCCCTCTCCTCCCTCACCATCATTGTCTTCTTCATCTGCTTTCGGAACCATACGGCGTCGTTGCCGCTCAATGCCACCCTCTCCGGGTGCCTCAACAGCTTCGACTGCGGTATCATTCACGACATTCCCTACCCCTTCACCGGCGGCGGTCAGCCCTCCCACTGCGGCCCACCTCAGTTCCATTTGAGCTGCCGGGACCATTTTCCCGAGTTGAGCATCTTGTCGGTGAATTATCGTGTCCTCGGACTCGACTCAGTTGGGCGTACCCTCAACTTGGCCCGTATAGACCTTTGGAATGAAACCTGTACCCAGAACTTAGTCAATTCGACATTTGATTTCATCGACTTCTGGTATGGTTCAGGCAACGAGAATCTTACCCTCATTTATGGGTGCAGCCCCTCTTATGCACTCAACATACAGCCAGAGAATCGGTTTGAATGTGCGTTTAATGGGAACCGAAGCGATTCTTATTCTTTGGTCGGTCCATTTCCAGTGGACCCAGTTCTTATTATTGTTGTTTGCGATACTCGGATTGAGGTGCCAATTCTTCAAAATGAAGCCATTAGGCTCACAAGCAACCGCTCATTGCTTAGGGAAGTTTTGATGAAGGGTTTTAATGTGAATTATAGCAGTCCTTATGAATATGAATGCTTGAAATGTCTAGATGATTCGGGTGGCAGATGTGGATTTGATTATGATTTGGGGAAACCCATTTGCATTTGTGGGGATCGGTTGTGTCCCTTCCCAGGCATTGGTGTAGGAGTTGCAGCTGCTGTTTGCATTCTTCTTGGATGTTGTGTGTACTTTATGGTAAGACGAAGGAGAATAATTGCAGAACGGTCAAAAAGCAAGGACCGCTTAATGCCTCCTTCAAGCAGAGGCGCAGCTACATCTACAACAAATATGTCTCAAAGTGTCCCATCTTACACCTCCTCTAAGTCTGAATCTGTGAAAAATAGTTTCTACTTTGGGGTTCAGGTATTTAACTATGCTGAATTAGAGGAGGCTACTAAAAATTTTGATCCTTCTAGAGAACTTGGTAATGGAGGTTTTGGCACTGTTTACTACGGCAACCTCAAAGATGGACGTGCAGTTGCAGTCAAACGTCTCTATGAAAGCAATCTGAAACGTGTTGAACAGTTCAAGAATGAAGTTGAGATTCTAGCTCGATTACGGCATAACAACCTGAATGAAGAGTATGGTGAAAAGAAAGCAGAAGTAATGAATATTATTAGGACAGATGAAATCATGCTTTTGAAAAATGTTCCTTCCCCACTTTCACCCGATTCGGTTGCTGATAAATGGATTAGCAGCTCCACTACATCTAATTCCTCATAG 1356 0.4484 MISISPSLSSLTIIVFFICFRNHTASLPLNATLSGCLNSFDCGIIHDIPYPFTGGGQPSHCGPPQFHLSCRDHFPELSILSVNYRVLGLDSVGRTLNLARIDLWNETCTQNLVNSTFDFIDFWYGSGNENLTLIYGCSPSYALNIQPENRFECAFNGNRSDSYSLVGPFPVDPVLIIVVCDTRIEVPILQNEAIRLTSNRSLLREVLMKGFNVNYSSPYEYECLKCLDDSGGRCGFDYDLGKPICICGDRLCPFPGIGVGVAAAVCILLGCCVYFMVRRRRIIAERSKSKDRLMPPSSRGAATSTTNMSQSVPSYTSSKSESVKNSFYFGVQVFNYAELEEATKNFDPSRELGNGGFGTVYYGNLKDGRAVAVKRLYESNLKRVEQFKNEVEILARLRHNNLNEEYGEKKAEVMNIIRTDEIMLLKNVPSPLSPDSVADKWISSSTTSNSS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0820 451 Pfam Wall-associated receptor kinase galacturonan-binding 36 99 IPR025287 GO:0030247
Glsi01g0820 451 MobiDBLite consensus disorder prediction 288 318 - -
Glsi01g0820 451 Pfam Wall-associated receptor kinase C-terminal 177 249 IPR032872 -
Glsi01g0820 451 MobiDBLite consensus disorder prediction 298 318 - -
Glsi01g0820 451 SUPERFAMILY Protein kinase-like (PK-like) 311 407 IPR011009 -
Glsi01g0820 451 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Glsi01g0820 451 Gene3D Phosphorylase Kinase; domain 1 316 413 - -
Glsi01g0820 451 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 402 IPR044652 GO:0004672
Glsi01g0820 451 ProSiteProfiles Protein kinase domain profile. 346 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0820 451 Pfam Protein tyrosine and serine/threonine kinase 349 408 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0820 Glsi-ChrGlsi01 15929345 15932832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0820 257 407 Receptor kinase-like Gene Family AT1G25390 41.722 7.67e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Glsi01g0820 PK_Tyr_Ser-Thr 9.6e-07 CL0016