Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0766 ATGGGGATTCAACTATATATTTCACTCTCGTCCTGTTGCCGCAAGGGTTCCTTCTGGCCAATTCAGACGTTAGGCTCTGCATCTGCAGCTCAGAACCCTTCAGCCATGGTTGCCGCCAAGAAAACTAAGAAGACTCATGAGAGCATTAACAACAGGCTGGCTCTTGTGATGAAGAGCGGAAAATATACCCTGGGTTATAAAACGGTTCTGAAATCCCTAAGGAACTCTAAAGGGAAACTGATTATTATTGCCAACAACTGTCCCCCTTTGAGGAAGTCGGAAATCGAATATTATGCAATGTTGGCAAAAGTTGGAGTTCATCATTATAATGGGAACAACGTCGATTTGGGAACTGCTTGCGGCAAATATTTTAGAGTGTGCTGCCTCAGCATTGTTGATCCTGGTGATTCCGACATCATTAAGACAATGCCTGGCGATCAGTAG 444 0.4437 MGIQLYISLSSCCRKGSFWPIQTLGSASAAQNPSAMVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIVDPGDSDIIKTMPGDQ 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0766 147 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 48 140 IPR004038 -
Glsi01g0766 147 ProSitePatterns Ribosomal protein L30e signature 1. 59 83 IPR022991 -
Glsi01g0766 147 PANTHER RIBOSOMAL PROTEIN L30 36 145 IPR039109 GO:0003723
Glsi01g0766 147 Gene3D - 37 143 IPR029064 -
Glsi01g0766 147 Hamap 50S ribosomal protein L30e [rpl30e]. 47 144 IPR000231 GO:0003723|GO:0003735|GO:0022625
Glsi01g0766 147 ProSitePatterns Ribosomal protein L30e signature 2. 115 135 IPR022991 -
Glsi01g0766 147 FunFam 60S ribosomal protein L30 37 143 - -
Glsi01g0766 147 SUPERFAMILY L30e-like 48 142 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0766 Glsi-ChrGlsi01 13142775 13148249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0766 36 147 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 88.393 1.77e-72 211