Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0763 ATGTATCAGTCTTCTGCAATGGGAAGGAAAAAGACGGAGGACGGTGGCCCCGGCACAAAGGCTAAGCCAAGTGGCAAAGATGCTTCTAAGAAGGAAAAATTCTCTGTCTCTGCCATGCTGGCCAATATGGATGAAAAACCTGATAAACCCCAGAAAGTCTCCTCTTCCTCTAGTAAGCCCAAGGCAAAATCTGTTCCAAAAGCTTTTGCATACACTGATGGTATTGATCTCCCTCCCTCTGATGACGAAGAAGACGATCTTATTCTAGAGGAGCAACAGAAAAATAATGTGCACAAGCGGTCCACTCAGCAGCAGAGGCCTGACATAAAGCCACTTGATGTATCTATTTCTGACAAAGAGTTAAAAAAGCGTGAAAAGAAGGATCTTCTTGCTGCCCATGTTGCAGAGCAGGCAAGGCAGGATGCTCTTAAGGATGACCATGATGCTTTTACTGTGGTCATTGGAAGCCGTACTTCAGTGCTTGATGGAGAAGACGATGTTGATGCTAATGTAAAAGATGTTACAGTTGAAAATTTCTGTGTGTCAGCTAGGGGTAAAGAACTTCTGAAGAATGCATCTGTGAGGATATCTCATGGGAAGAGGTATGGTTTGGTTGGGCCAAATGGAAAGGGCAAGTCCACACTATTGAAACTTCTTGCTTGGAGGAAGATACCAGTACCAAAGAATATTGATGTGCTTCTGGTTGAACAGGAGGTAGTTGGCGATGATAAAACGGCACTTGAAGCAGTTGTTTCAGCTAATGAAGAACTTGTTAAAACCCGACAAGAAGTTGCTTCTCTACAGAATGCAACTTCTGTTGAAGGAAGTGATGACAAAGATGATAATTATGGAGATGATGCAGGAGAGAAGCTCGCTGAACTGTATGAAAAATTACAGCTGATGGGTTCTGATGCTGCTGAAGCACAAGCATCAAAGATTCTTGCTGGTTTGGGTTTTACAAAGGATATGCAGGGTCGTCCTACAAAATCATTTAGTGGTGGTTGGAGGATGAGAATTTCTTTAGCTAGAGCACTGTTTTTGCAGCCAACACTGTTATTGCTTGATGAACCTACAAATCATCTTGATCTGAGGGCTGTTCTCTGGTTGGAGGAGTACTTGTGCCGTTGGAAGAAGACTTTGGTGGTCGTCTCACATGATAGGGATTTCCTCAATACAGTTTGCAATGAGATAATTCATTTGCATGATTTGAAACTCCATTTCTATCGTGGAAATTTTGATGATTTTGAAAGTGGTTATGAGCAGCGTCGTAAAGAGATGAACAAGAAGTATGAGATTTATGACAAGCAGATGAAAGCAGCCAAAAGGAGTGGAAATCGGGCTCAGCAGGAAAAGGTGAAGGATCGAGCTAAGTTTGCAGCCAAGGAAGCATCAAAAAGCAAGGGCAAGGGCAAGGTTGATGAGGATGAAGTTCCAGCAGATGTTCCACAAAAGTGGAGGGATTACAGTGTTGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCCCTTCTGCAACTTATTGAAGTTAGTTTCAGTTACCCAAATCGAGAGGATTTTAGACTCTCAAATGTTGATGTTGGTATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGGAAATCTACGCTGCTGAATCTTCTTGCTGGCGATTTGGTTCCAACTGAGGGAGAAGTTCGAAGGAGTCAGAAGTTGAGGATTGGAAGATATTCCCAGCACTTTGTGGACCTTCTCACAATGGATGAAACGCCTGTTCAGTATCTTCTTCGTCTCCATCCGGATCAGGAAGGACTTAGCAAGCAGGAGGCTGTTCGAGCAAAGCTTGGTAAGTTTGGACTCCCTAGCCATAACCATCTTACCCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTCGGGTAGTCTTCACATCAATATCCATGTCAAAGCCCCACATTTTGCTGTTGGATGAACCCACTAATCATTTAGATATGCAAAGTATCGATGCATTAGCTGATGCACTGGATGAATTCACTGGAGGAGTTGTTCTTGTGAGTCATGATTCCAGATTGATATCCCGTGTATGCGAGGATGAAGAGAGGAGTCAAATCTGGGTAGTTGAGGATGGTACAGTCAGAACCGTCGATGGAACTTTTGATGATTACAAAGAGGATTTGATGAGAGAAATTAAAGCTGAAGTGGATGATTGA 2199 0.4347 MYQSSAMGRKKTEDGGPGTKAKPSGKDASKKEKFSVSAMLANMDEKPDKPQKVSSSSSKPKAKSVPKAFAYTDGIDLPPSDDEEDDLILEEQQKNNVHKRSTQQQRPDIKPLDVSISDKELKKREKKDLLAAHVAEQARQDALKDDHDAFTVVIGSRTSVLDGEDDVDANVKDVTVENFCVSARGKELLKNASVRISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANEELVKTRQEVASLQNATSVEGSDDKDDNYGDDAGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFLQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCNEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQMKAAKRSGNRAQQEKVKDRAKFAAKEASKSKGKGKVDEDEVPADVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVRTVDGTFDDYKEDLMREIKAEVDD 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0763 732 Coils Coil 250 270 - -
Glsi01g0763 732 ProSitePatterns ABC transporters family signature. 331 345 IPR017871 GO:0005524|GO:0016887
Glsi01g0763 732 MobiDBLite consensus disorder prediction 90 112 - -
Glsi01g0763 732 Coils Coil 423 443 - -
Glsi01g0763 732 CDD ABCF_EF-3 505 707 - -
Glsi01g0763 732 FunFam ABC transporter F family member 4 172 455 - -
Glsi01g0763 732 FunFam ABC transporter F family member 4 470 732 - -
Glsi01g0763 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 718 IPR027417 -
Glsi01g0763 732 Pfam ABC transporter 522 657 IPR003439 GO:0005524
Glsi01g0763 732 MobiDBLite consensus disorder prediction 1 112 - -
Glsi01g0763 732 Gene3D - 472 732 IPR027417 -
Glsi01g0763 732 Gene3D - 172 456 IPR027417 -
Glsi01g0763 732 Pfam ABC transporter 189 359 IPR003439 GO:0005524
Glsi01g0763 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 433 IPR027417 -
Glsi01g0763 732 CDD ABCF_EF-3 174 404 - -
Glsi01g0763 732 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 505 730 IPR003439 GO:0005524
Glsi01g0763 732 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 174 427 IPR003439 GO:0005524
Glsi01g0763 732 SMART AAA_5 531 707 IPR003593 GO:0016887
Glsi01g0763 732 SMART AAA_5 198 403 IPR003593 GO:0016887
Glsi01g0763 732 MobiDBLite consensus disorder prediction 442 478 - -
Glsi01g0763 732 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 148 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0763 Glsi-ChrGlsi01 13054477 13057653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0763 504 717 Calmodulin-binding Proteins AT2G36910 29.167 1.38e-14 76.3