Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0747 ATGCAGATGTTTACTCCCACATACGACTCCAACCCTTTCCCTGGCTTTCCCTCTTCGTCTTCTTCTTACCCTCTTCTTCCTTTTCTTAACCCTGAAAGTACTTCTGCAAATACCAACTTCCTCCATCATGACCCACTTGCTGTTCCCATCATACCCACTAATCATGCTCCGATCCCAGAAACAGTAACCAATTTGGCCGTTGCAGACTGTGCTGCAATGCCGAAACAGAATGCCAACTGTGCCCATTTTGGCATTTCCAATTTCCTCACCCAGAAACCTTCCAAGAAAGATAGGCACAGTAAGATTTACACATCTCAAGGCCTGAGAGATCGTAGGGTCAGACTGTCCATCGAAATCGCCCGCAAGTTCTTTGATCTTCAAGACATGCTAGGGTTTGACAAAGCCAGCAATACCCTTGAGTGGCTCCTCACCAAGTCTAAGAAAGCAATTAAAGAGCTAGCTCGAAGTAAGAACAGAAGCAGTGCTGGTGCTAAAAGCTCCTCCTCCTCTTCTGAGTGTGAAGTGGTTTCAGGGATCAACCAAGTCACTGATATTCCAAACTTCCAAAGGGTAGATTCAAATGACCAGTCATTGGTTGGTGGTGAGCTTGCTGCAAAAGAGAGGAGGTTGAAAAGGGCACAGAAGGAAGCTGCGTGTGCTCGGGCAAAGAAGGAGTCAAGGACAAAGGCAAGAGCAAGAGCAAGGGAAAGGACTAGTTACAAGATGTGCACCCCCACCTCTGTCACTACTGGACGGGTGCATGACTTGAAGAAAAGATTCCCTGCAACTACAAACTCTCAAATCCAGCACCAATTAAGGTCACCCACCCAGCCTGAAGCTGGTTCAAGATCGCCTAACCCGATTCAACCTCACCCTCACTTAGTGGGTAAGGAAACACCCAGAGACCACTTTGACGTTATTGAGGAGGCTATTGTGATTAAAAGGAAGTTGAAGCCATCTTTGATGTCTTCTTATCCCCAAAACCTTGTGATCCCTAAGGAAGCAAGTTTCAGCAACAGTGAATACTCCTCATTTCCCAATTTGTCTCCAAATTGGGATACTAGCAGTGCCATTGGGCGCTCCAACTTCTGTGCCATAGCGAGCTTGAACCTATCTACAGGTATGTGTCATGAACAAGTGTTTAAGTACTCATCTTGA 1158 0.4637 MQMFTPTYDSNPFPGFPSSSSSYPLLPFLNPESTSANTNFLHHDPLAVPIIPTNHAPIPETVTNLAVADCAAMPKQNANCAHFGISNFLTQKPSKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLLTKSKKAIKELARSKNRSSAGAKSSSSSSECEVVSGINQVTDIPNFQRVDSNDQSLVGGELAAKERRLKRAQKEAACARAKKESRTKARARARERTSYKMCTPTSVTTGRVHDLKKRFPATTNSQIQHQLRSPTQPEAGSRSPNPIQPHPHLVGKETPRDHFDVIEEAIVIKRKLKPSLMSSYPQNLVIPKEASFSNSEYSSFPNLSPNWDTSSAIGRSNFCAIASLNLSTGMCHEQVFKYSS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0747 385 Pfam TCP family transcription factor 94 243 IPR017887 -
Glsi01g0747 385 MobiDBLite consensus disorder prediction 262 298 - -
Glsi01g0747 385 ProSiteProfiles TCP domain profile. 95 153 IPR017887 -
Glsi01g0747 385 MobiDBLite consensus disorder prediction 218 238 - -
Glsi01g0747 385 ProSiteProfiles R domain profile. 224 241 IPR017888 -
Glsi01g0747 385 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 92 290 IPR005333 GO:0003700
Glsi01g0747 385 Coils Coil 203 223 - -
Glsi01g0747 385 MobiDBLite consensus disorder prediction 262 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0747 Glsi-ChrGlsi01 12326031 12327188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0747 91 353 TCP Transcription Factor Family AT1G67260 36.462 6.32e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Glsi01g0747 TCP 7.3e-47 No_clan