Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0677 ATGGAGGGTAGTTCTAATGGCACTTCTTGTAGTGTGATGGCTTTTGGAGAGAACAGTAGTGGGTTATGTCCAATGATGATGATGCCTTTAGTGACTACTTGTCATCATGGGGGTCATCATCCAATCAATCCTAATCTTAATAATATCAATAATCCTAATGCAGACACAAACAGTCTCCTCCTTCCTTTGCCTTCTTGCGCTAATGATCATCAAGCCCCAAACCGCAACTATAACAGTGGCAGTTCCTCTATCCCGCTCCACAATATCAACCACAACACGAGCAACAATACTGGGTTAGGTTGTTATTTCATGGAGAGCAGCAACAACAACAACGATGGTAGCTCCTCTTCTTCTGTGAAGGCCAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGAGCACCGCCTGAAGCGGTTGCAAGGTTAGAAGAAGCATGCGCATCTGCAATAGCAATGGCCGCCGCCGGCGATGGAGCTGGCACGGCCTGCATCGGTGAAGATCCGGCACTGGATCAGTTCATGGAGGCATATTGTGAGATGCTGACCAAGTACGAGCAAGAGATCTCGAAACCCTTCAAGGAAGCTATGCACTTCCTTGAATCCATCGAGCGTCAGTTCACAGCTCTTACAATTTCTTCTTCGGACTTTGCTTGTAACGAGGTCACGGGTAGGAATGGATCATTTGAAGATGTTGATGGGCACAACAAAATCATCGATCCACTGGCAGAGGAACAAGACTTGAAAGGCCAACTTCTACGCAAGTACAGTGGATACCTGGGCAGTCTTAAGCAGGAATTCATGAAGAAGAGGAAGAAAGGAAAACTGCCTAAAGAAGCAAGGCAACAGCTACTTGATTGGTGGAGCAAACACTATAGATGGCCGTACCCATCTGAGTCACAGAAGATGGCTCTTGCTGAGTCAACAGGTCTGGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAACGTCACTGGAAACCTTCAGAGGACATGCAGTTCATGGTGATGGATCCATCCCATCCTCACCATCACTATTACATGGACAGTGTTCTTGGAAATTCCTCCTATCCCATGGATCTAACTCACACAATGCTCTGA 1134 0.4612 MEGSSNGTSCSVMAFGENSSGLCPMMMMPLVTTCHHGGHHPINPNLNNINNPNADTNSLLLPLPSCANDHQAPNRNYNSGSSSIPLHNINHNTSNNTGLGCYFMESSNNNNDGSSSSSVKAKIMAHPHYHRLLAAYVNCQKVGAPPEAVARLEEACASAIAMAAAGDGAGTACIGEDPALDQFMEAYCEMLTKYEQEISKPFKEAMHFLESIERQFTALTISSSDFACNEVTGRNGSFEDVDGHNKIIDPLAEEQDLKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSKHYRWPYPSESQKMALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDPSHPHHHYYMDSVLGNSSYPMDLTHTML 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0677 377 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 346 - -
Glsi01g0677 377 SMART KNOX2_2 170 221 IPR005541 GO:0003677|GO:0005634
Glsi01g0677 377 Pfam KNOX1 domain 119 157 IPR005540 GO:0003677|GO:0005634
Glsi01g0677 377 CDD homeodomain 288 340 IPR001356 GO:0003677
Glsi01g0677 377 Gene3D - 281 343 - -
Glsi01g0677 377 ProSitePatterns 'Homeobox' domain signature. 314 337 IPR017970 GO:0000981|GO:0006355
Glsi01g0677 377 Pfam KNOX2 domain 173 220 IPR005541 GO:0003677|GO:0005634
Glsi01g0677 377 SMART HOX_1 278 343 IPR001356 GO:0003677
Glsi01g0677 377 FunFam Homeobox protein knotted-1-like 2 281 343 - -
Glsi01g0677 377 ProSiteProfiles 'Homeobox' domain profile. 276 339 IPR001356 GO:0003677
Glsi01g0677 377 SUPERFAMILY Homeodomain-like 278 355 IPR009057 -
Glsi01g0677 377 Pfam Homeobox KN domain 296 335 IPR008422 GO:0003677|GO:0006355
Glsi01g0677 377 ProSiteProfiles ELK domain profile. 256 276 IPR005539 GO:0003677
Glsi01g0677 377 Pfam ELK domain 256 277 IPR005539 GO:0003677
Glsi01g0677 377 SMART ELK_2 256 277 IPR005539 GO:0003677
Glsi01g0677 377 SMART KNOX1_2 117 161 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0677 Glsi-ChrGlsi01 10073338 10078683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0677 119 377 Homeobox Transcription Factor Family AT1G62360 74.060 3.43e-120 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Glsi01g0677 KNOX2 1.1e-20 No_clan