Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0672 ATGGCTGCCCCCCGAGTGGCTCCTTCTCTGTTTGCCACTGAGTTTTTGTCAATCGCTTTGATCTTTGCTGCTCTTCCTCTTGCTCTAGCCAACACTGACCCTGCTGATGTTCAAGCACTTGAGGTTTTGTACAATGCTTTAAACAGTCCAACTCAACTAACCGGATGGAAAATTGGTAGCGGCGATCCCTGTGGAGAGTCGTGGAAAGGGATAACATGTGAGGGCTCAGCCGTTGTTTCCATTGAACTCTCAGGTTTGGGACTCAATGGGACTTTGGGGTACCTGCTTTCGGACCTCATGTCACTGAGACATCTTGACTTAAGTGACAACAAGATCCATGACACAATCCCCTACCAGTTACCACCGAATTTGACAAGCCTGAACTTTGCAAGCAATAACTTGAGTGGAAATCTTCCTTATTCCATTTCTGCCATGGCTTCCCTCAATTATCTGAATGTAAGCCATAATGCGCTCTCCCTGTCAATTGGAGACATTTTTGCTAGTCTTGCTGATCTTGGTACCATGGATCTATCATTCAATGACTTTTCTGGGGATCTTCCTAGTTCATTTGGTTCATTGTCTAATCTTTCTTCTCTCTTATTGCAGAACAATCACTTGACTGGTTCTCTTAATGCTCTTGTTGGTTTGCCTTTAAATTCTTTAAATGTTGCAAACAACAATTTCAGTGGATGGATACCTCATGAGCTTAGTTCAATTCACACTTTCATATTTGATGGAAATTCTTTTGACAATGGCCCTGCTCCTCCTCCGCCACCACATACTCTGGCTCCACCGAGTAGAGCTCCTAATAACCATCATCGTTCTGGATCTCGTCCACATAAAACGCAGGGGTCTGAATCTGATAGTAAAAATTCCAATAGCGATAAGGGTTTGACTTCTGGGGCTGTTGTAGGCATCATTTTGGGTTCAGTGTTTCTGGTCCTTGTTGTGCTACTTGCTGTTGCTTTCTGTATCCGAAAGCATAAAAGGAAGGAAAAAGGTGTAAGAACTTCCAGTGGGAGTCATCCACTTAGAAATAATAATGTAATTCCTCCGATGCAAGAGCAGAGGGTAAAAAGTGCTGCTGTTGTTACAGATCTGAAGCCCCCTCCTGCAGAAAAAGTGGTGGCTGAGAGGGTTCCTTCCAACAATGGATCTGCCAGGCGGATAAAATCCCCTATAACTGCTACATCATACACAGTTGCTTCTCTCCAAAGTGCAACAAATAGTTTTAGTCAAGAATTTATTATTGGTGAAGGTTCTCTTGGTCGAGTTTACAAGGCTGAATTTCCTAATGGGAAGATCATGGCCATTAAGAAGATCGACAATGCAGCACTATCATTACAGGAGGAAGACAACTTTCTTGAAGCTGTTTCGAATATGTCACGCTTGCGGCATCCAAACATTGTTTCACTGGCTGGATACTGTGCTGAGCATGGGCAACGTCTTCTAGTTTATGAGTATGTGGGAAATGGAAATCTACATGATATGCTCCATTTTGCTGAAGATAGCAGCAAGGCTTTATCTTGGAATGCCCGTGTACGGATAGCGCTTGGCACAGCTCGAGCTTTAGAGTACTTGCATGAAGTATGCTTGCCTTCTGTCGTACATAGAAACTTCAAATCTGCAAACATATTACTTGACGAGGAGTTGAATCCTCACCTGTCTGACTGTGGTTTAGCTGCTTTAAACCCAAACACTGAGCGACAGGTTTCAACTCAAATGGTTGGTTCATTTGGTTATAGTGCTCCTGAGTTTGCATTATCAGGAATATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGGTAATGTTAGAGCTTTTGACAGGTCGGAAGCCACTTGACAGTTCCCGGGCCAGATCAGAGCAATCACTTGTGAGGTGGGCTACTCCTCAGCTCCATGATATCGATGCCTTGGCTAAAATGGTTGATCCTGCCTTGAATGGCATGTATCCTGCTAAGTCACTGTCACGTTTCGCTGATATCATTGCCCTCTGTGTTCAGCCGGAACCTGAATTTCGACCGCCCATGTCCGAGGTAGTGCAAGCATTGGTACGGTTAGTGCAAAGAGCGAGCGTGGTTAAACGGCGCCCCAGCGACGAATCTGGTTTTAGTCACAAAACTCCAGATCACGAGGCCATAGACATGTCATTTTGA 2160 0.4435 MAAPRVAPSLFATEFLSIALIFAALPLALANTDPADVQALEVLYNALNSPTQLTGWKIGSGDPCGESWKGITCEGSAVVSIELSGLGLNGTLGYLLSDLMSLRHLDLSDNKIHDTIPYQLPPNLTSLNFASNNLSGNLPYSISAMASLNYLNVSHNALSLSIGDIFASLADLGTMDLSFNDFSGDLPSSFGSLSNLSSLLLQNNHLTGSLNALVGLPLNSLNVANNNFSGWIPHELSSIHTFIFDGNSFDNGPAPPPPPHTLAPPSRAPNNHHRSGSRPHKTQGSESDSKNSNSDKGLTSGAVVGIILGSVFLVLVVLLAVAFCIRKHKRKEKGVRTSSGSHPLRNNNVIPPMQEQRVKSAAVVTDLKPPPAEKVVAERVPSNNGSARRIKSPITATSYTVASLQSATNSFSQEFIIGEGSLGRVYKAEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHPNIVSLAGYCAEHGQRLLVYEYVGNGNLHDMLHFAEDSSKALSWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALNPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRARSEQSLVRWATPQLHDIDALAKMVDPALNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGFSHKTPDHEAIDMSF 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0672 719 SUPERFAMILY Protein kinase-like (PK-like) 390 685 IPR011009 -
Glsi01g0672 719 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 689 IPR046959 -
Glsi01g0672 719 Gene3D Transferase(Phosphotransferase) domain 1 489 709 - -
Glsi01g0672 719 Gene3D Ribonuclease Inhibitor 33 262 IPR032675 -
Glsi01g0672 719 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 489 699 - -
Glsi01g0672 719 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 377 488 - -
Glsi01g0672 719 Gene3D Phosphorylase Kinase; domain 1 374 488 - -
Glsi01g0672 719 MobiDBLite consensus disorder prediction 249 296 - -
Glsi01g0672 719 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Glsi01g0672 719 MobiDBLite consensus disorder prediction 251 265 - -
Glsi01g0672 719 MobiDBLite consensus disorder prediction 699 719 - -
Glsi01g0672 719 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 33 260 - -
Glsi01g0672 719 SUPERFAMILY L domain-like 33 252 - -
Glsi01g0672 719 Pfam Protein kinase domain 414 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0672 719 CDD STKc_IRAK 417 688 - -
Glsi01g0672 719 ProSiteProfiles Leucine-rich repeat profile. 101 122 IPR001611 GO:0005515
Glsi01g0672 719 ProSiteProfiles Protein kinase domain profile. 411 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0672 Glsi-ChrGlsi01 9938280 9944790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0672 145 719 Strubbelig Receptor Gene Family AT4G22130 72.917 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Glsi01g0672 Pkinase 1.5e-44 CL0016