Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0655 ATGGACTGGATTAGGGGCCACATCCTCGGCCGCGGTTCCACCGCCACGGTCTCGATGGCCAAGACCCACTGGTCTGGTCAGGTGTTTGCGGTCAAGTCCGCGGAGCTCCACCAATCGGAGTTCCTCAAGAGGGAACAGAGGATTCTTTCAACATTGAAGTGTCCTCAAATTGTAGCATACAAAGGTTATGACGTTACCTTAGAGGATGGTGTAGTCTTGTACAATCTGTTCATGGAATACGCGTCTTATGGTACGCTTGCCGACGCAATTCGCCGGCAAAGTGGGCTAGATGAGGTCTCTGCTCGAACCTATGCACGCCAAATCCTGCTTGGGCTGAACCACCTTCATTCTAAAGGCATAGTGCATTGTGATATCAAGGGAAGAAATGTTTTGGTCACTGACGAAGGGGCTAAAATCGCAGACTTGGGTTGTGCTCGGAGGGTTGGTGAGGTGGCGGATTCCAGAGTAGTGATTGCAGGCACGCCGGCGTTCATGGCACCTGAGGTGGCGCGTGGTGAGCAACAAGGGTTCCCTGCTGATGTGTGGGCTCTGGGGTGTACGGTGTTGGAGATGATCACAGGGAAGGCTCCGTGGCACGATGTTTCTGACCCAGTAACTGCACTTTATCGAATCGGGTTCTCCGGCGAGGTGCCGGAGATACCAGGTTTCATGTCGATGCAAGGCAAGGATTTTTTGAGCAAGTGTCTGAAGAGAGACCCAAATGAGAGGTGGTCGGTGAGTGAACTTCTCAGACATGAATTTGTTCAGGAATTGACTTTAATTTTGAAGGAATCTGATGGTTCAAATTCGGATACTCCGACTAGTGTAATGAATCCATGCATCTGGGAATCATTGGAGGAGTTAGGGACAACTCAGAATCCGACCCATGATTGTTCCTGGAATTCCGCTAGAGACAGGATTCGTAGGTTGTCCGCAGAAGCTACGACGTCGTTTGATGCTAAGCCGAACTGGGAAAGCGATGAAAACTGGATCGCTGTTAGAAGCAATGGGGCCGAAGAGTCGAATGAAAAAACAGAGACCTGTGTGTCTGACACTGTTTACATTAGAAAGGAGGAAAGTTTGGTACTTTTTTATGAAGCCAAAACAAAAATTACAATTAGATTGGGCAGTTATAATGCCAACAATAATGTTAGTGACTACAGAAGCGACCGCAGTTCTTGTAATTGTAACAGAGAATTACTATTTGGTTATCCTTGTTCATGTATGAAAAGTATTGTTCCCAAAGGCAAAATTGACTCTCAAAACAAGTTCATTTTGTGCATATTGATTTGCTTCTCTATGTCATGCGGCCAACATAATGGTTAA 1326 0.4706 MDWIRGHILGRGSTATVSMAKTHWSGQVFAVKSAELHQSEFLKREQRILSTLKCPQIVAYKGYDVTLEDGVVLYNLFMEYASYGTLADAIRRQSGLDEVSARTYARQILLGLNHLHSKGIVHCDIKGRNVLVTDEGAKIADLGCARRVGEVADSRVVIAGTPAFMAPEVARGEQQGFPADVWALGCTVLEMITGKAPWHDVSDPVTALYRIGFSGEVPEIPGFMSMQGKDFLSKCLKRDPNERWSVSELLRHEFVQELTLILKESDGSNSDTPTSVMNPCIWESLEELGTTQNPTHDCSWNSARDRIRRLSAEATTSFDAKPNWESDENWIAVRSNGAEESNEKTETCVSDTVYIRKEESLVLFYEAKTKITIRLGSYNANNNVSDYRSDRSSCNCNRELLFGYPCSCMKSIVPKGKIDSQNKFILCILICFSMSCGQHNG 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0655 441 SMART serkin_6 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0655 441 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 349 - -
Glsi01g0655 441 SUPERFAMILY Protein kinase-like (PK-like) 2 295 IPR011009 -
Glsi01g0655 441 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Glsi01g0655 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Glsi01g0655 441 Pfam Protein kinase domain 6 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0655 441 CDD STKc_MAPKKK 2 255 - -
Glsi01g0655 441 ProSiteProfiles Protein kinase domain profile. 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0655 441 Gene3D Transferase(Phosphotransferase) domain 1 2 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0655 Glsi-ChrGlsi01 9429209 9430534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0655 2 361 MAP Kinase Kinase Kinase AT5G55090 46.950 3.78e-108 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Glsi01g0655 Pkinase 3.3e-54 CL0016