Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0639 ATGGCAATCTCTGATGAGAAGCAAAGAATAATGCCAATGCCAGAAGATCTACTTCCTGGTAGAGGCCAACAATTGATTGTACCTGAATCAGTTTTTCTGATAAATCCCATGAGTCCTGATCTAAAAGGGGAGATTGATGACAAGTACCAGTACTCAATGGACAATAAAGATGGTGGAGCACTTGGATGGATTAGTTCTGTCCCCATAGTGGGATTCTGGGTCATCTTTCCCAGTAATGAGTTATGCAATGGTGGTCCTAGCATGAGGGCAAAAAACGATTATCAGTTTTGGGTTCAGACAGATTCAAACGGGAATTTCTCCATCAAGAATGTTATCCCTGGAGTCTATGCACTCCATTGGTGGGTTCCTGGTTTCATTGGTGATTGCATGCATAACGAACTAGTTGCCATCTCAGCAGATGGTCCTATTTTATGGGAGATTGGTTTCCCTGATCTTTCAGCTATTGTGTACTTTGTTCCTGATGTAAATATGAAGTCTGTCAACAAGTTATTTCTCAACAGCCCCGAAAAGTAA 534 0.4157 MAISDEKQRIMPMPEDLLPGRGQQLIVPESVFLINPMSPDLKGEIDDKYQYSMDNKDGGALGWISSVPIVGFWVIFPSNELCNGGPSMRAKNDYQFWVQTDSNGNFSIKNVIPGVYALHWWVPGFIGDCMHNELVAISADGPILWEIGFPDLSAIVYFVPDVNMKSVNKLFLNSPEK 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0639 177 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 91 175 - -
Glsi01g0639 177 SUPERFAMILY Starch-binding domain-like 68 141 IPR013784 GO:0030246
Glsi01g0639 177 Pfam Rhamnogalacturonate lyase family 1 45 IPR010325 -
Glsi01g0639 177 CDD RGL4_M 93 141 IPR029413 -
Glsi01g0639 177 Pfam Polysaccharide lyase family 4, domain II 91 140 IPR029413 -
Glsi01g0639 177 Gene3D - 81 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0639 Glsi-ChrGlsi01 9099125 9102208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0639 1 89 Polysaccharide Lyase AT1G09890 54.444 1.13e-28 109