Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0624 ATGTCTGGAGTTGCCAGAGATTGGCTGTTGACTTTGCAAAGACTAGAGCAACTGCTGAATTGCCAAGAGCTTAGAAACTCAGTTTTTCCAGATTTTATGGAAAGTATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGACCAGATTCTCTAAGAGGAACACAACCGACAGCCATGCTTAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTTAGAACCCTTCAAACACATTATAAGAGGAAGCATGGGATCAAACCCTACATGTGCAGAAAATGTGGCAAAGCATTTGCAGTGAAAGGTGATTGGAGAACTCATGAGAACTCATGGAACAACTTGTATAGCATCTTAAAAGAAAATTCAATTGATTCCACAATTTCTATCAGATCGGGTACTTAG 444 0.4189 MSGVARDWLLTLQRLEQLLNCQELRNSVFPDFMESMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHENSWNNLYSILKENSIDSTISIRSGT 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0624 147 Gene3D Classic Zinc Finger 49 127 - -
Glsi01g0624 147 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 134 IPR013087 -
Glsi01g0624 147 SUPERFAMILY beta-beta-alpha zinc fingers 89 124 IPR036236 -
Glsi01g0624 147 PANTHER ZINC FINGER PROTEIN WIP2 35 124 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0624 Glsi-ChrGlsi01 8758274 8759145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0624 36 129 C2H2 Transcription Factor Family AT3G57670 85.106 3.60e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi01g0624 None None None