Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0617 ATGCAGCAAACTCAGGCCTTCCTCCCTGGATCTGCATTACGATGAAGATTAGTGCATTCAAGCCGTTTAATCAACAGTACTTTTAGTCAAATTCCATGGAGTTGGTCTAGTGGTGGAGATCCTCTTTCTGGGCTCTCTAATTTCTTCTCTGCAGGGCTGAAAAGCGAAAATCCCATTGCTACAACAATGTCTTGCTCCAATCTGACAATGTGGGTGTCTTCAAAACCTTCCTTATCTGAAGCCTCTTCACTCTCTTTCCGTTCAGTCCTCAACCCTTTTCAGCTTCCTTCCCAGAACCCATCTGTTACTGGCTCATCGCGGTCCTCTGTTACCCCAATTCAGTGTGGTCTCCGAGAGCTCAGAGAACGTATTGATTCTGTGAAGAACACCCAGAAGATTACAGAGGCCATGAAGCTTGTGGCTGCCGCAAAAGTCAGAAGAGCACAAGAAGCTGTTGTTAATGGCAGACCCTTTTCAGAGACCCTGGTTGAAGTCCTTTACAACATCAATGAGCAGCTCCAAACTGAAGATATTGATGTTCCTCTCACCAAAGTTAGGCCCGTGAAGAAGGTTGCCCTGGTTGTTTGCACAGGAGATCGAGGTCTTTGTGGGGGGTTCAATAATCAAATCATAAAGAAAGCCGAGGCCAGAATTGCCGAGTTGAAGGATCTTGGTCTTGCTTATACTATTATTAGTGTTGGCAAAAAGGGTAATTCGTATTTTCTTCGTCGGCCTTACATTCCAGTTGATAGGTTCCTGGAAGGAGGTACACTTCCCACTGCTAAAGAAGCTCAAACAATTGCTGATGATGTTTTCTCCCTCTTTATCAGTGAAGAGGTTGATAAAGTGGAGCTATTGTACACCAAATTTGTGTCATTAGTCAAGTCTGATCCTGTTATTCATACTTTGCTTCCACTCTCACCAAAAGGAGAGATCTGTGATTTGAATGGGAATTGTGTGGATGCTGCTGAGGATGAGTTCTTCAGGTTAACCACCAGGGAAGGGAAGTTAACTGTGGAAAGAGATGTTGTGAGGACTAAGACAACAGATTTCTCCTCAATTTTGCAATTTGAGCAGGACCCAGTTCAGATTCTTGATGCCTTGTTACCTCTCTATTTGAATAGCCAAATTTTGAGAGCATTGCAGGAGTCACTAGCCAGTGAGCTAGCGGCTAGAATGAGCGCCATGAGCAATGCAACTGATAATGCAGTGGAATTGAAGAGGTCATTGTCAATCGTATACAATAGACAACGTCAAGCCAAAATCACAGGAGAAATTCTGGAGATTGTTGCTGGAGCCAATGCCCTAGTTTAG 1314 0.4414 MQQTQAFLPGSALRXRLVHSSRLINSTFSQIPWSWSSGGDPLSGLSNFFSAGLKSENPIATTMSCSNLTMWVSSKPSLSEASSLSFRSVLNPFQLPSQNPSVTGSSRSSVTPIQCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTEDIDVPLTKVRPVKKVALVVCTGDRGLCGGFNNQIIKKAEARIAELKDLGLAYTIISVGKKGNSYFLRRPYIPVDRFLEGGTLPTAKEAQTIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDLNGNCVDAAEDEFFRLTTREGKLTVERDVVRTKTTDFSSILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNAVELKRSLSIVYNRQRQAKITGEILEIVAGANALV 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0617 437 Gene3D - 184 307 - -
Glsi01g0617 437 FunFam ATP synthase gamma chain, chloroplastic 333 436 - -
Glsi01g0617 437 Coils Coil 117 137 - -
Glsi01g0617 437 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 116 436 IPR035968 GO:0015986|GO:0045261|GO:0046933
Glsi01g0617 437 Gene3D ATP synthase, gamma subunit, helix hairpin domain 116 183 - -
Glsi01g0617 437 Pfam ATP synthase 117 436 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi01g0617 437 Hamap ATP synthase gamma chain [atpG]. 114 436 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi01g0617 437 PANTHER ATP SYNTHASE GAMMA CHAIN 62 436 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi01g0617 437 CDD F1-ATPase_gamma 117 433 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi01g0617 437 Gene3D ATP synthase, gamma subunit, helix hairpin domain 332 436 - -
Glsi01g0617 437 NCBIfam ATP synthase F1 subunit gamma 116 436 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi01g0617 437 PRINTS ATP synthase gamma subunit signature 188 207 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi01g0617 437 PRINTS ATP synthase gamma subunit signature 383 402 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi01g0617 437 PRINTS ATP synthase gamma subunit signature 414 435 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi01g0617 437 PRINTS ATP synthase gamma subunit signature 281 298 IPR000131 GO:0015986|GO:0045261|GO:0046933
Glsi01g0617 437 FunFam ATP synthase gamma chain, chloroplastic 115 182 - -
Glsi01g0617 437 FunFam ATP synthase gamma chain, chloroplastic 184 307 - -
Glsi01g0617 437 ProSitePatterns ATP synthase gamma subunit signature. 422 435 IPR023632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0617 Glsi-ChrGlsi01 8433310 8436331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0617 92 436 Primary Pumps ATPases AT1G15700 71.264 4.81e-175 493