Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0600 ATGATGCAGCCTGGACCTGGCATGGCTCCACCAAACATGGGTCAACAACCCAACCAACAATACCAGCAGCAGCAACCGTACATGATGATGCCTCCGCAGGCTCAGGCACCGCCGATGTGGGCACAGTCAGCCCAGCCCCCACCGCAGCAGGCGGTTGCTCCACCGCAACCGGCTCAATCCGTCCAGCCGACGAGCGCGGATGAGGTCCGTACCCTTTGGATCGGTGATTTGCAGTACTGGATGGACGAAAACTATTTGTATAATTGTTTTGCTCATACCGGCGAGGTGTCCTCTGTAAAAGTCATTCGGAATAAGCAAACTAATCAATCAGAAGGTTATGGTTTTATTGAGTTTCTCACTCGTGCTGCTGCGGAGAGAATACTTCAAACATATAATGGTACAATTATGCCAAATGGTGGGCAAAGCTTCAGATTGAACTGGGCAACCTTTAGTGCAGGTGAGAGGCGTCAAGATGATACTCCAGATTACACAATATTTGTTGGAGACTTGGCTGCAGATGTCACTGATTACATGCTACAAGAGACATTTAGAGCTCGGTATCCCTCAATTAAAGGTGCAAAAGTTGTGATTGATAGGCTCACTGGGCGGACAAAGGGTTATGGTTTTGTAAGGTTTGGAGATGAGAGTGAACAAATTCAAGCTATGACTGAGATGCAAGGGGTTCTTTGTTCGTCAAGACCCATGCGAATTGGACCAGCCACAAACAAAAACCTTGGAACTGGGGGTCAGCAAAAAGCTTCATATCAGAATCCTCAAGGGGCACAGAGCGAGAGTGATCCCAATAATACAACTATTTTTGTTGGCAATCTGGATCCTAACGTTACAGATGAACATCTGGGGCAAGTTTTTGCCCAGTATGGAGATTTAGCACATGTGAAGATTCCACCAGGAAAGAGATGTGGGTTTGTCCAATTTGCTGACAGGAGCTGTGCAGAAGAGGCACTGCGGATGTTAAATGGAACACTGTTGGGTGGGCAAAATGTTCGTCTTTCATGGGGCCGCAGTCCTTCGAACAAACAGGCTCAGCCAGATCCAAACCAGTGGAATGGTGGATATTATGGATATGCTCAGGGATATGAAAATTATGGATATCCTCCTGCAGCTTCACAGGATCCCAACATGTACGGCAGCTATCCAGGGTATGCGAATTACCAACCACCACAGCAACAGCAGCAAATGGGATATAGCTGA 1212 0.4752 MMQPGPGMAPPNMGQQPNQQYQQQQPYMMMPPQAQAPPMWAQSAQPPPQQAVAPPQPAQSVQPTSADEVRTLWIGDLQYWMDENYLYNCFAHTGEVSSVKVIRNKQTNQSEGYGFIEFLTRAAAERILQTYNGTIMPNGGQSFRLNWATFSAGERRQDDTPDYTIFVGDLAADVTDYMLQETFRARYPSIKGAKVVIDRLTGRTKGYGFVRFGDESEQIQAMTEMQGVLCSSRPMRIGPATNKNLGTGGQQKASYQNPQGAQSESDPNNTTIFVGNLDPNVTDEHLGQVFAQYGDLAHVKIPPGKRCGFVQFADRSCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQAQPDPNQWNGGYYGYAQGYENYGYPPAASQDPNMYGSYPGYANYQPPQQQQQMGYS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0600 403 SMART rrm1_1 71 146 IPR000504 GO:0003723
Glsi01g0600 403 SMART rrm1_1 271 338 IPR000504 GO:0003723
Glsi01g0600 403 SMART rrm1_1 164 238 IPR000504 GO:0003723
Glsi01g0600 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 342 IPR000504 GO:0003723
Glsi01g0600 403 FunFam Polyadenylate-binding protein RBP45 10 154 - -
Glsi01g0600 403 Gene3D - 249 351 IPR012677 -
Glsi01g0600 403 MobiDBLite consensus disorder prediction 12 30 - -
Glsi01g0600 403 FunFam Polyadenylate-binding protein RBP45C 155 247 - -
Glsi01g0600 403 MobiDBLite consensus disorder prediction 1 64 - -
Glsi01g0600 403 SUPERFAMILY RNA-binding domain, RBD 147 248 IPR035979 GO:0003676
Glsi01g0600 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 335 IPR000504 GO:0003723
Glsi01g0600 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 137 IPR000504 GO:0003723
Glsi01g0600 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 233 IPR000504 GO:0003723
Glsi01g0600 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 150 IPR000504 GO:0003723
Glsi01g0600 403 MobiDBLite consensus disorder prediction 239 274 - -
Glsi01g0600 403 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 59 346 - -
Glsi01g0600 403 SUPERFAMILY RNA-binding domain, RBD 47 149 IPR035979 GO:0003676
Glsi01g0600 403 SUPERFAMILY RNA-binding domain, RBD 255 370 IPR035979 GO:0003676
Glsi01g0600 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 242 IPR000504 GO:0003723
Glsi01g0600 403 Gene3D - 154 248 IPR012677 -
Glsi01g0600 403 Gene3D - 8 153 IPR012677 -
Glsi01g0600 403 MobiDBLite consensus disorder prediction 389 403 - -
Glsi01g0600 403 FunFam Polyadenylate-binding protein RBP45C 248 352 - -
Glsi01g0600 403 MobiDBLite consensus disorder prediction 243 274 - -
Glsi01g0600 403 CDD RRM1_SECp43_like 71 151 - -
Glsi01g0600 403 CDD RRM2_SECp43_like 162 241 - -
Glsi01g0600 403 MobiDBLite consensus disorder prediction 382 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0600 Glsi-ChrGlsi01 7776272 7779892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0600 69 349 Eukaryotic Initiation Factors Gene Family AT2G23350 27.875 8.67e-27 110