Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0586 ATGGACTCACAAAGGTTGTTACTTTCCAGAGAAAACCCTAGACCCCTGGCTTTCCCGACTGGGCGAGTAGTCCCTTCGGCCACCGCAAAATCCATGCCCAATGAGATCGCCCAGAAGCCTCTTGCTCCTATTTTATCGGAACGATTCAAGGCTTTGCTCAAGCAACGGGACGACGAACGGAGGGCTTTGTACGACGATGATGTGCCACCGCCCTCCACCGAAGAAATTGTGCAGCTTTACGAGATAGTATTGTCGGAGCTCACCTTGAATTTAAAGCCCATCATTACGGAACTTACCATCATTGCTGGAGATCAAAGGGAGCATGGCAAGGGTATCGCTGATGCAATTTGCGATCGAATTCTTGAGGTATCTGTGGAGCAAAAGCTTCCTTCGCTTTATCTGCTGGACAGTATTGTGAAGAATATTGGTGGGGAGTATGTTAGATACTTCTCTTCACGTCTTCCTGATGTTTTCTGTGAGGCATACAGGCAAGTGCAGCCTAATTTGCATCAAGCTATGCGGCATCTCTTTGGCACCTGGTCAACAGTCTTTCCACCTTCTGTCCTTTGCAAGATTGAAGCTCAATTGCAATTTTCTCAAGTTGTTAATAATCAAAATCAATCATCCAGCATTAATCCCCCAAGGGCATCTGAAGCTCCGCGACGAACTCATGGCATACATGTTAATCCAAAATACTTGCGGCAGTTGGAAAACTCAACTTTTGAGACTGCTGGAGATGAAAGGTTGGACTCAGCAGGAAGCATGGGTCATACAAGTTTCAGCCTTGGAGCTAATAAGATGCATCAAACTTTAAGTAGCAGGCATGGAAGAGTCCCTCCTTCACCATCAAGAGTTGGACTTGATAGGCCTTTCTCGGCATCTATAGATGAATTTACAGCTGACAATTCTACTGTTAGAATAGTTGAAAGAGAGTCACCTTCTCATCCTGCATTTGATTATGGAGTAGGTAAATCAATTGCTAGAGATGAAGAGTTGATTGAATGGCCACGAAAACAGTATTCTAGTGATGGTCGTAATCAGTTTCCATTTTCTACAAATGGACATCAACGCCAAAGTCCAAGATCTCTGATTGATGCATATGGCAGTGACAAAAGGCAAGAAACTTCAAGCAATAAGCCTTTGGTTGAACAGCTTGATATAAATGGTTTAGACAGCAAGGTGGTGTCAACATCATGGCAGAATACTGAAGAGGAGGAGTTTAATTGGGAAGATATGAGTCCAACATTAGTGGACCATAGGAGAAATAATGGTTTTTTTCCATCATCTATTATTGTATCCAGGGAAAGACCTACTGGTATTGTTGCAGCTAAAGCAGCTGGTTTGGGGCAAGATACCAGGAGCAGTTGGTCTAGTCAATCTCAGCTTCCTCCAGTGGATGATCCTTCTGTTATAGCAGAAGATACATTTGTCTCGTCGGGTTATGGTCGTGGATCATTGGGTCAGATATCTGGATTACAAAATCAGAGTCTGGGCTCCCGTCATCCTCATGATGCTTGGAAGATTTCGCATCATTCGTCTAATTCTTCAACAAACCTCATTAATGTGAGAGGTCGCGTGAGGAATGCTCATTTATCTCCTATTGATAGTGTTTCTAGCACTGAAGTAAATCCATATGGGAAGCGAACTGCCATATCAAGAATTGGTTCTGGGCTTGAGCCTAATCTGGAAGCTTGTGCACCAGTTTTACCAGCATCTTTCCGAATGAGGCCCCCCGTAAATGTGCATGCTACTCGTCCGCCCACCTTAAATCCGATTTTTCCATTGCAAAAACATGTTAGGAGTCAGTTTGAAGCAATAAATGCTAGCAACACCATTGTAAATCAAGGTATAAATAAATCTGCATTCATGTCTGAACGGCTGTTGGACAGTGTTGAGAACAACAATATGAGTAAAGTAAAGATACCTCAGATTCCTAATCAGCTACCTGGCCCGATGTCATTGAACCAGCAGAACTATGGACAAGCACCACAACCACAACTTTTTCCATCTCAGGATGTGCGAGAAGGCTTACTTGAATCACAAGGTCCAGCAGCATCTCAATTTAGTAGTCGGAGCTCTTTGCAAGTACATGCTCCTGCTTTAAGTACAACCATGTCAAATTCATTTCCTGTTGGACAATTTCCCTTACCTGTCCAAAATATATCAAATAACTCTTTTCATTCACAGAGGGGAGCCTTGCCCCCCTTATTGCCAGTTACGCCTGCTCCATCACAAATGATACCTCAGAAAAATGCTAGTCCGTATGTGTCAAGCCAACAGCCAGCTGGTGCATTTTCGGGTTTGATTAATTCGCTTATGGCCCAAGGTTTGATCGCATTGAATGAACAACCACCTGTGCAGGATTCTGTTGGAACCGAGTTTAATCCAGATGTTCTAAAGGTTCGTCATGAGTCTGCAATTAGTGCCCTATATGCTGACCTCCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAGTGTCAAGAGGAGCACAGTAGTCATATGGACTGGCATGTGACTAAGAACCGGATGTCTAAAAATCGCAAGCAGAAGCCTTCTCGTAAGTGGTTTGTGAGTGAGAGAATGTGGCTCAGTGGTGCAGAGGCATTAGGAACTGAAGCAGTGCCTGGTTTTTTGCCAACTGAGATCGTAGAGGAGAAGAAAGACGATGAAGAGCTGGCTGTGCCGGCTGATGAAGACCAGAGTACATGTGCATTATGTGGAGAGCCTTTTGATGAGTTTTATAGTGATGAAACAGAGGAATGGATGTATAGAGGAGCTGTATACTTAAATGCGCCCAAGGGAACAGTAGTAGGCATGGATAGGTCGCAGTTTGGTCCTATTGTTCATGCTAAATGCAGATCTGAGTCTAGTACGGCCCCCTCTGAAGAATTTGGGCACGACGAAGGGGGTACCATTGAAGAGGGTAGTCAAAGAAAAAGATTGCGGAGTTAA 2955 0.442 MDSQRLLLSRENPRPLAFPTGRVVPSATAKSMPNEIAQKPLAPILSERFKALLKQRDDERRALYDDDVPPPSTEEIVQLYEIVLSELTLNLKPIITELTIIAGDQREHGKGIADAICDRILEVSVEQKLPSLYLLDSIVKNIGGEYVRYFSSRLPDVFCEAYRQVQPNLHQAMRHLFGTWSTVFPPSVLCKIEAQLQFSQVVNNQNQSSSINPPRASEAPRRTHGIHVNPKYLRQLENSTFETAGDERLDSAGSMGHTSFSLGANKMHQTLSSRHGRVPPSPSRVGLDRPFSASIDEFTADNSTVRIVERESPSHPAFDYGVGKSIARDEELIEWPRKQYSSDGRNQFPFSTNGHQRQSPRSLIDAYGSDKRQETSSNKPLVEQLDINGLDSKVVSTSWQNTEEEEFNWEDMSPTLVDHRRNNGFFPSSIIVSRERPTGIVAAKAAGLGQDTRSSWSSQSQLPPVDDPSVIAEDTFVSSGYGRGSLGQISGLQNQSLGSRHPHDAWKISHHSSNSSTNLINVRGRVRNAHLSPIDSVSSTEVNPYGKRTAISRIGSGLEPNLEACAPVLPASFRMRPPVNVHATRPPTLNPIFPLQKHVRSQFEAINASNTIVNQGINKSAFMSERLLDSVENNNMSKVKIPQIPNQLPGPMSLNQQNYGQAPQPQLFPSQDVREGLLESQGPAASQFSSRSSLQVHAPALSTTMSNSFPVGQFPLPVQNISNNSFHSQRGALPPLLPVTPAPSQMIPQKNASPYVSSQQPAGAFSGLINSLMAQGLIALNEQPPVQDSVGTEFNPDVLKVRHESAISALYADLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTEAVPGFLPTEIVEEKKDDEELAVPADEDQSTCALCGEPFDEFYSDETEEWMYRGAVYLNAPKGTVVGMDRSQFGPIVHAKCRSESSTAPSEEFGHDEGGTIEEGSQRKRLRS 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0586 984 SMART 558neu5 75 197 IPR006569 -
Glsi01g0586 984 MobiDBLite consensus disorder prediction 641 665 - -
Glsi01g0586 984 MobiDBLite consensus disorder prediction 961 984 - -
Glsi01g0586 984 Gene3D - 69 198 IPR008942 -
Glsi01g0586 984 MobiDBLite consensus disorder prediction 953 984 - -
Glsi01g0586 984 FunFam polyadenylation and cleavage factor homolog 4 69 197 - -
Glsi01g0586 984 Pfam CID domain 92 188 IPR006569 -
Glsi01g0586 984 MobiDBLite consensus disorder prediction 1 21 - -
Glsi01g0586 984 ProSiteProfiles CID domain profile. 72 200 IPR006569 -
Glsi01g0586 984 SUPERFAMILY ENTH/VHS domain 71 197 IPR008942 -
Glsi01g0586 984 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 58 967 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Glsi01g0586 984 ProSitePatterns Zinc finger C2H2 type domain signature. 818 838 IPR013087 -
Glsi01g0586 984 CDD CID_Pcf11 77 197 IPR047415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0586 Glsi-ChrGlsi01 7496514 7503171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0586 756 984 C2H2 Transcription Factor Family AT4G04885 73.362 1.57e-112 364